Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4260 259 5e-64 seq3421 161 1e-34 seq1857 111 2e-19 seq1658 93.3 4e-14 >seq4260 Length=107242 Score = 259 bits (286), Expect = 5e-64 Identities = 1066/1636 (65%), Gaps = 55/1636 (3%) Strand=Plus/Plus Query 152850 CGGTCGGCCGCCATCTCAATCAT-GCGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAA 152908 ||||| || ||||| || || || || || || || ||||||||| | || ||||||| Sbjct 46297 CGGTCCGCAGCCATGTCGATGATCGCCTTCTGGCTG-ATCTCCCAGACCGTCTTGTACAG 46355 Query 152909 ATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAAT 152968 || || | || ||||| || ||| | |||||| || || || ||| || | || Sbjct 46356 CTTCTTGATGCGGTCCGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGAT 46415 Query 152969 AGCGTTTCGTATTTCGGGCGTGT-ACACGTTCAGTTTAATGAGGTCATCGATCAAGTACT 153027 | || ||| | | | ||| ||| | | | | | || || | ||| || Sbjct 46416 A-CGGTTCTTCATCGTGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACAACCACG 46474 Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 |||| ||||| || ||||| ||||| | ||| || | | || | ||| || ||| Sbjct 46475 GGTTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAG 46534 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | |||||| ||| || || ||| ||| | ||||||||||| |||| Sbjct 46535 GCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCA 46594 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 || || || || || | |||||| || | | |||| | | || ||| |||| Sbjct 46595 GCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCC 46654 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 |||| ||||||| || | ||||||||||||||| ||| | || | ||||| Sbjct 46655 ACAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCG 46714 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC-CTCGAGC 153326 |||||| |||| ||||||||||| | | |||| ||||| | | | ||| || Sbjct 46715 AGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAACTCGCA-CGATCGCTCCAGT 46773 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC-GCTTCTTCGCTCTC 153385 ||| | | ||| ||||| || ||| || || || || | || || | ||| Sbjct 46774 GCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGT-CGCCGAGCCTCGGCCGACTC 46832 Query 153386 GTACGGCATGCGC-AGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 ||| ||| | | | | || || || || || || ||||| | ||||| ||||| | Sbjct 46833 AAACG-CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCG 46891 Query 153445 GTCGATGCTTCTCGTTG--CT---GCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATC 153499 | || || | |||| || ||||||| |||| | ||||||| || || Sbjct 46892 GACGGTGACGCATGTTGGACTTGCGCGCCTC---CTCG--ACCGGATAGTAGTTAATGTC 46946 Query 153500 GATAATTTTGTTGAGGTTGC-GCACCACCACTTTAGTTATCGCCTTA-AGTTTCTCGAAA 153557 ||| || ||||| ||||| ||| ||| | | ||| | || || || Sbjct 46947 GATGATCTTGTTCAGGTTCTTGCAGATGGCCTT--GGCAACGCTGTGCAGACGCTTAAAG 47004 Query 153558 TCATAGGTCATTTCGTCGACGCGT--ACGCATCGATTCACGGCAATAGACGCCAGATTAC 153615 || || ||| || ||| | || | | | || || || || || || || | Sbjct 47005 TCGTACGTC--TTGGTCACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGC 47062 Query 153616 AGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATT 153675 | || ||| ||| |||| ||||||||| | |||||||| || | |||| ||| | Sbjct 47063 ACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACT 47122 Query 153676 TTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGT 153735 | || ||| | || | ||| ||||| ||||| ||| ||||| ||| | || ||| Sbjct 47123 TGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGA 47182 Query 153736 ACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGC-AGGTCCTGCGCTCGC 153794 | || ||| |||||| || | |||| ||| | || || | ||||||| Sbjct 47183 AAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG-CGTACCAGAGCTTCTGCGCTTTG 47241 Query 153795 ACCCGCTGCCGAT--AGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGT 153852 || | ||| | |||| |||||| |||||| |||||||| || ||||||||||||| Sbjct 47242 AC--GGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGT 47299 Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912 | |||||||||||||| || || || |||| | || ||||| |||||||| ||| Sbjct 47300 CACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGT 47359 Query 153913 -CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGC 153971 | || | ||| | |||||| ||||| ||||||||||| || || | ||| || ||| Sbjct 47360 TCTGC-TCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGC 47418 Query 153972 GCCTTGCAA-TCCTCCGCGCCCATGTT---GCGTTTCAGATTGAGCACGCTATAGATGTC 154027 || ||| |||||| || ||| ||| ||| | ||| | | ||| ||| Sbjct 47419 GCAC-GCACCTCCTCCTTTCCGTGGTTCTTGCG---CAGGTCGAGGAACTCAAAGACGTC 47474 Query 154028 GGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATC 154084 | |||||| ||||||||||| | || | |||||| |||||| || ||||| || Sbjct 47475 CGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTC 47534 Query 154085 GACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC-GGTGC 154143 ||||| |||| | | |||||||||||||| | |||||| | | |||| |||| | | Sbjct 47535 GACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCG-TTGCTGACAC 47593 Query 154144 CGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGC 154203 ||||||| || | |||| | | || | ||| | ||| | ||| |||| Sbjct 47594 CGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGATGC 47653 Query 154204 CGCC-GCCGTACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGAT 154261 | || ||||| ||| || || || | |||| || || ||||||||||||||| Sbjct 47654 CACCGGCCGT-CTTGGAGATCATGGCACAAGTC-TTGAGGGTATCGTAGATGCCGTCGAT 47711 Query 154262 GCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGC 154321 || || | | | | ||| ||||| | | ||||| |||| | | ||| Sbjct 47712 CGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGG-GTGCGGGGTACCGG 47770 Query 154322 CG-AAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTT 154380 || ||||| || || ||||| ||||| ||||| ||| | | |||||| | Sbjct 47771 CGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCT 47830 Query 154381 CGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCT 154440 |||||||| ||||| || | |||||| ||||||| ||||| |||||||||||||||| Sbjct 47831 CGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCT 47890 Query 154441 GCGGACGTTCGGCGAC 154456 | ||||| || ||||| Sbjct 47891 GGGGACGCTCTGCGAC 47906 >seq3421 Length=130295 Score = 161 bits (178), Expect = 1e-34 Identities = 495/756 (65%), Gaps = 41/756 (5%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| | |||||| | |||||| ||| ||| | ||||||||||| || | ||| | Sbjct 34749 AACGACAATGAGCGCCACTTTATCTCGCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGT 34690 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAG--CGGAACGTTCCGGAACTCGAGGCGC 52203 ||||| ||| |||||| | ||| | ||| ||||| |||| || |||||| | Sbjct 34689 ATCGTCAACGAGAACCTCGTTGAGCGTTT-CAGTTCGGAA-GTTCAGGCCGCCGAGGCTC 34632 Query 52204 AATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGC 52263 | ||| || ||| || | | || ||| | | ||| |||||| ||| |||| Sbjct 34631 GTTGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCGGAGACCTACTCGCTGC 34572 Query 52264 TCATTGAGCAGCTGATAAAAGATGAGCACGAGC---GCGACACGCTGCTGAATGCGTTCG 52320 |||| || || || | | | ||||| |||| | || ||| | | || ||| Sbjct 34571 TCATCGA-CA-CTTACATCCG-TGAGCCTGAGCAGCGTGAATATCTGTTTGACGCCGTCG 34515 Query 52321 AGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACA 52380 || | | ||| ||| | ||||| | ||||| | |||||| ||||||| Sbjct 34514 AGACCATCCCGGTCGTCAAGCAGAAGGCCGACTGGGCTCTTCGATGGATC---AGCGACA 34458 Query 52381 CC---GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttttttt 52437 ||||| | |||||||| |||| || || ||| ||||||||| | ||||| | Sbjct 34457 AGCGTGCCACTTTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCT 34398 Query 52438 CCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGT 52497 | ||| || ||| | ||||| | | || | | || | |||||||| || |||| Sbjct 34397 CGGGCTCATTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGT 34338 Query 52498 TCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT----- 52552 || ||||||| | || ||||| ||||| || || |||||||||||||| ||||| Sbjct 34337 TCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCT 34278 Query 52553 ----CTACTACAAGACGCGCGTG-ACCGAAAAATTGGATTCGGACACGATCCTGAGCATG 52607 | || || || ||||| | ||| | |||||| | || | || Sbjct 34277 TCAGCCACCTCAGGAGGCGCGCGCACC-------------CAGACACGGTGCTCAAGATC 34231 Query 52608 TTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTG 52667 ||| ||||| |||| ||||| |||| ||| | | | | || |||| ||| Sbjct 34230 ATCACTGAGGCCGTGGAAATCGAGAAGGCGTTCCTGTGCGAATCAATCCCCGTCGCGCTC 34171 Query 52668 CTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTG 52727 | || |||||| || ||||||| | ||||| |||| ||| || ||||| || || Sbjct 34170 ATCGGTATGAACAGCAAGCTCATGTGCCAATACATTGAGTATGTCGCCGATCGCTTGCTG 34111 Query 52728 GTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCA-ATCCGTTTGAGTTTATGAACAA 52786 || |||||| | ||| | ||| | | | | || ||||||||| ||||||| ||| Sbjct 34110 GTATCGCTCGGAAACCCAGTGCACTACGGCTC-CACATGTCCGTTTGACTTTATGACCAA 34052 Query 52787 CATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAA 52822 ||||||| | || |||||||||||||| || ||||| Sbjct 34051 CATTTCGTTGGAAGGCAAGACCAACTTCTTTGAGAA 34016 >seq1857 Length=5366 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || ||||||||||| Sbjct 3375 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 3434 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || ||||| | |||| |||||||| ||||| || || Sbjct 3435 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 3494 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||| | |||||||| Sbjct 3495 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATGGTGTCCGAAGACTCCAC 3553 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || ||||| || || || || ||||| |||||||| Sbjct 3554 CTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 3601 >seq1658 Length=160837 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||||||| | || || ||| ||||| || ||||| | Sbjct 96587 GACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCG 96528 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || ||||| ||||| ||| || || | Sbjct 96527 AAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 96468 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| || |||| || | || || || || || || || Sbjct 96467 TTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTA 96408 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 96407 ACAAAAATCTGCAT 96394 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| || ||| || || ||||| || || |||| | Sbjct 96815 GATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCA 96756 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || ||||| ||||| ||| || || | Sbjct 96755 AAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACG 96696 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| || |||| || | || || || || || || || Sbjct 96695 TTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTG 96636 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 96635 ACAAAGATCTGCAT 96622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496232828964240