Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4260 168 8e-37 seq3421 123 3e-23 seq1436 82.4 9e-11 >seq4260 Length=107242 Score = 168 bits (186), Expect = 8e-37 Identities = 910/1429 (64%), Gaps = 49/1429 (3%) Strand=Plus/Plus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934 |||||||||||||| || | ||| |||||||||| ||| || ||||| |||||||| Sbjct 46489 AACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTC 46547 Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 || |||| ||| || || || || || ||||| ||||||| || || ||| Sbjct 46548 GTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTT 46607 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT 116054 ||| || || | || ||||||| | ||||||| | | | | Sbjct 46608 GCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGG 46667 Query 116055 CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 | || ||||||| || |||| | ||| || || || ||||| || | | || Sbjct 46668 CGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAGCCGGCGTACGT 46727 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACA 116173 ||| || ||| | ||| ||||| ||| | | |||| || || || ||||| || | Sbjct 46728 CTCGTAGCTGCCGTGCTGCTCAGCCAACTCGCACGATCGC-TCCAGTGCGGCGTGGTAGA 46786 Query 116174 TTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC 116233 | |||||||| || | | |||| | | |||||| | || |||||||| | || | Sbjct 46787 TGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTCAAACGC-ATACCCC 46845 Query 116234 ACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 | | || || ||||||| || || || ||||||| || || || || || | ||| Sbjct 46846 ATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCATG 46905 Query 116293 TTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 116352 || ||||| || || ||| || ||||| | || | ||||| | | | || || || Sbjct 46906 TTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGTTC 46965 Query 116353 TTGGTGACAACCTTTGTGA---TTTCATGAAGCTTT---TCGTAA-TCAAAACTGCGAGT 116405 ||| || |||| | | | | || |||| ||||| || || || Sbjct 46966 TTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGTACGTCT----TG---GT 47018 Query 116406 CTCT---TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 116462 | || ||| ||| || | || || ||||| || || || || ||||| | ||| Sbjct 47019 CACTGGGTCAATGA---ACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTC 47075 Query 116463 ATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAA 116522 || | | ||||||| || || || |||||||| || || | ||| || ||||| | Sbjct 47076 GTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAG 47135 Query 116523 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGT 116582 |||||| || || ||| ||| || |||||||| || || | || | ||||| Sbjct 47136 GTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGT 47195 Query 116583 CTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG 116641 ||| || || |||| ||| || || | ||| | | || ||| | | || ||| || | Sbjct 47196 CTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTG-ACGGTGCGCTTCG 47254 Query 116642 CTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCT 116700 || ||||| ||||||| ||||||| ||||||||| ||||| ||| || Sbjct 47255 AGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGT-AGCAGTCG 47313 Query 116701 GAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGC 116760 | || || || || | || || | ||| ||||| | || || ||| |||| | Sbjct 47314 GCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTC 47373 Query 116761 TTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCA 116820 ||||||||||| || || | |||||| || ||||||| || || || | || || Sbjct 47374 TTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCC 47433 Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || |||| || | || || | || |||| |||||| ||||| | | Sbjct 47434 TTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATG 47493 Query 116881 TACACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTT 116934 || | || | | || | |||| ||| |||||| || || | ||| || Sbjct 47494 TAAATAGCAAAGGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTG 47550 Query 116935 GCGTTAAATACGCGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCGAA 116992 ||| || ||||| ||||| || | || || | | || || || || || || Sbjct 47551 TTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGA--CACCGTTGGTGCCGGCAA 47608 Query 116993 --TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTT 117050 |||||| | | || | | || ||||||| | || || || || ||| ||| Sbjct 47609 TGTACGAGCC--GGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTT 47666 Query 117051 TGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATT 117110 ||||| || || | |||| | ||||||| || |||||||||||| |||| | Sbjct 47667 GGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCAT 47726 Query 117111 TGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGG 117170 | | |||||||| ||| | || || || ||||| ||||||||||| || || Sbjct 47727 GGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGG 47786 Query 117171 TGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAA 117229 | |||||| | || ||| ||| ||||| | ||| ||||| | | | | Sbjct 47787 CGAGGCGTGGGT-AAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGA 47845 Query 117230 TGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 |||| | ||||| || |||| | ||| ||||| | ||||| ||||| Sbjct 47846 TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGG 47894 >seq3421 Length=130295 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||||||||| |||||||| || || ||||| ||||| Sbjct 34289 GCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCG 34348 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| |||| |||||||| ||||| ||||| Sbjct 34349 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATG 34408 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 ||||| || || ||||| | ||||||||||| || Sbjct 34409 CCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAA 34446 >seq1436 Length=166054 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/126 (76%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 170396 CCGAAGAACCATATGAGGGTGCGACTGTCCTGGAGGCCCAAA--AGGGTGCGTACTATAC 170453 ||||||| | ||| || ||||| |||||||||||| |||||| ||| | | || || Sbjct 45929 CCGAAGACCAATACGAAGGTGCCACTGTCCTGGAG-CCCAAAGCAGGCTAC-TATGATCG 45986 Query 170454 CCCGATCACAGCCCTTGATTTTGAAGCACTGTATCCATCAATTATGATGGCACACAACTT 170513 || ||| || |||| ||||| | | | |||||||| || | ||||||||||||||| | Sbjct 45987 ACCCATCGCAACCCTGGATTTCGCATCGCTGTATCCCTCGGTCATGATGGCACACAACCT 46046 Query 170514 GTGCTA 170519 ||||| Sbjct 46047 TTGCTA 46052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613470642639720