Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1857 145 9e-30 seq1658 116 4e-21 seq440 100 3e-16 >seq1857 Length=5366 Score = 145 bits (160), Expect = 9e-30 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| ||| |||||| ||||| |||||||| || || || || | Sbjct 3386 ACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCC 3445 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||||||||| || ||||| |||| ||||||||||||| ||| | || |||||| Sbjct 3446 GTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTT 3505 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | ||||| || ||||| || | ||||| Sbjct 3506 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGAT 3565 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| || ||||| || || || |||||||| ||||| ||| Sbjct 3566 GGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTTG 3605 >seq1658 Length=160837 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||| || || | || ||| || || || ||||||||||| || || || || Sbjct 96608 CGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCG 96549 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| || ||||| || | |||||||| || | || | || |||||| Sbjct 96548 TCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTG 96489 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | ||||| || || || || | || || Sbjct 96488 TCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAAT 96430 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| ||||| |||||||| || ||||| Sbjct 96429 GGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 96394 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||| || |||||||| | || ||||||||||||||||| || Sbjct 96812 TCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAG 96753 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||| || | || | || |||||||| |||||| ||||| ||| Sbjct 96752 ATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTT 96694 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || || | |||||||| ||||| || ||||| || || Sbjct 96693 GTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGAC 96634 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 96633 AAAGATCTGCAT 96622 >seq440 Length=208867 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || ||||| | || ||||||||||| |||||||| Sbjct 137739 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAG 137798 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||||||||||| || | | |||||||||| ||||| ||||| Sbjct 137799 ATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGA 137853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565204718856840