Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3421 331 9e-86 seq1857 122 9e-23 seq1658 122 9e-23 seq440 105 7e-18 >seq3421 Length=130295 Score = 331 bits (366), Expect = 9e-86 Identities = 599/861 (70%), Gaps = 29/861 (3%) Strand=Plus/Plus Query 132595 ACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAG 132654 |||||| |||| || || | |||||||||||||| || || || || || ||||| Sbjct 33986 ACGCCAGCTTTTGCGTACTCTGCTACCTTTTTCTCAAAGAAGTTGGTCTTGCCTTCCAAC 34045 Query 132655 GAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCT-TGG--TGCCGATC 132711 |||||| |||||||| || || || | | | ||||||| ||| | |||| | Sbjct 34046 GAAATGTTGGTCATAAAGTCAAACGGACATGTGGAGCCGTAGTGCACTGGGTTTCCGAGC 34105 Query 132712 AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTA 132771 | | || |||| | ||||| || |||| |||||||| ||||| | || || Sbjct 34106 -GAT--ACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCTGTTC 34162 Query 132772 AGTCCCAGCAGACGC-ACCGGCAGCGCTTCGGTGAGAAA-GCGTTGCTCGATGGCGACCG 132829 | || | || ||| || || | | |||| || || || || |||||| | || | Sbjct 34163 ATACCGATGAG-CGCGACGGGGATTGATTCGCACAGGAACGCCTT-CTCGATTTCCACGG 34220 Query 132830 CGTCGGTGACGAT-TTCCCTAACGCGC---GCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 | || |||| ||| || | || | | |||| || | || | || || Sbjct 34221 CCTCAGTGATGATCTTGAGCACCGTGTCTGGGTGCGCGCGCCTCCTG----AGGTGGCTG 34276 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 || | | ||| |||||||| || | |||||||| | || ||||| |||||| | Sbjct 34277 AAGAGAAGGCAGGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 34336 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || || | ||||||||||| ||||| || |||||||| || || | |||||| |||| Sbjct 34337 AACGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCC 34396 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 || || |||| |||||||||||| || || || ||||| |||||| |||| ||||| Sbjct 34397 GAGAAAAAGATGCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGC 34456 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 ||| | |||||| || || ||||| |||||||| | |||||| ||| || || ||| Sbjct 34457 TTGTCGCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCG 34516 Query 133126 ATGGCGTTCAACAAACGGAGTTT--CTCTTCCGAGG--AACGCACGTAGGTGTCGATGAG 133181 | ||||| ||||| || || | || | ||| ||| | ||| ||||||||||| Sbjct 34517 ACGGCGT----CAAACAGATATTCACGCTGCTCAGGCTCACGGATGTAAGTGTCGATGAG 34572 Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241 ||| || | |||||||| | ||||||||| ||| || || ||||| ||||| || Sbjct 34573 CAGCGAGTAGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACG 34632 Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCC 133301 |||||| | |||| ||||| | ||||||||| || || || ||||||||||| || Sbjct 34633 AGCCTCGGCGGCCTGAACTTCCGAACTGAAACGCTCAACGAGGTTCTCGTTGACGATACC 34692 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA- 133360 || || ||||| || || ||||| ||| ||| || |||||||| |||||||||| Sbjct 34693 ATCCGACGCAGCGAAGAACGCAAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAG 34752 Query 133361 --AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418 | ||||||||| | ||||||||| ||||| | |||||| ||||||| || || Sbjct 34753 CTTGTTGTCCCAGTCGTGGAGGTCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGA 34812 Query 133419 CGCCTCGGCTTTTTTGTACAT 133439 |||||||| || |||||||| Sbjct 34813 AGCCTCGGCCTTCTTGTACAT 34833 >seq1857 Length=5366 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || |||||||| || |||||||| |||| || ||| | Sbjct 3604 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 3545 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| ||||| ||||| Sbjct 3544 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 3485 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| || || || |||||| Sbjct 3484 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTAC 3425 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || ||||| |||||||| ||| || | || || Sbjct 3424 AACATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 3375 >seq1658 Length=160837 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||||||||| ||||| || |||| |||||| || | Sbjct 96394 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 96453 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | || || Sbjct 96454 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 96512 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 96513 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAA 96572 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || || || ||||||| || | ||| |||| Sbjct 96573 CATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCG 96608 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| ||||| |||||||| |||| |||||| | | Sbjct 96622 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 96681 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | || || Sbjct 96682 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 96740 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | ||||| || |||||||| Sbjct 96741 GCAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAA 96800 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| | || || || ||||| || ||| Sbjct 96801 CATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGT 96837 >seq440 Length=208867 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || || || ||||| ||| | || || ||| || | |||| | | | | | || | Sbjct 137905 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 137846 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| |||||| ||||||| ||||| || || | ||| || || Sbjct 137845 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 137786 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | ||||||||| |||||||||||||| |||||| |||| || || Sbjct 137785 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 137726 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||| ||| || | || || Sbjct 137725 CTTGTGCTCCGTCTGCGTGGTGG 137703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500142995953280