Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1658 93.3 2e-13 seq3200 86.0 2e-11 >seq1658 Length=160837 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || ||||| || || || || || Sbjct 96622 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 96681 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || || ||||| |||||||| |||||||||||||| Sbjct 96682 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 96741 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || |||||||| | ||| || |||| || || Sbjct 96742 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 96801 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || |||||||| || Sbjct 96802 ATTCAGAAGGAATCCACTCTTCACTTGGT 96830 Score = 87.8 bits (96), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| ||||| || || || || || || |||||||| || || || || || Sbjct 96394 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 96453 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || || || || |||||||| |||||||||||||| Sbjct 96454 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 96513 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || ||||| || |||| | | || || || Sbjct 96514 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 96573 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | || || | || |||||| | || || |||| Sbjct 96574 ATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCGACT 96611 >seq3200 Length=132528 Score = 86.0 bits (94), Expect = 2e-11 Identities = 270/417 (65%), Gaps = 11/417 (3%) Strand=Plus/Plus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | |||| | | || || ||||| | || ||||| |||| ||||| Sbjct 99793 GGCAAGCCCCAGATTCGCATTGAATACAAGGGTGAGAAGAAGACTTTCACTCCCGAAGAG 99852 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || ||||| |||||||| || ||| || || || || || | ||| | | Sbjct 99853 ATCTCATCCATGGTTCTCCTCAAGATGCGCGAGACTGCCGAGGCTTACCTCGGTGGTACC 99912 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | ||||| || | |||||||||||||| ||||| || | || || || || || Sbjct 99913 GTCAAGGATGCTGTCGTCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACC 99972 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || ||| | || | || || | || || || || || || || || Sbjct 99973 AAGGATGCTGGTATCATTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCT 100032 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-ACAGA---AGaaaaaaaTATTTT 451488 || || | || || || || | | ||||| || || || || ||| || | Sbjct 100033 GCCGCCATCGCTTACGGTCTCG-------ACAAGAAGACCGAGGGTGAGAAGAATGTTCT 100085 Query 451489 AGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGT 451548 | || ||| | |||||||| || ||| || | ||| | ||||| || || | Sbjct 100086 CATTTTCGATCTCGGTGGAGGTACCTTCGATGTATCGCTCCTTACCATTGAGGAGGGTAT 100145 Query 451549 ATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || ||||| ||| |||||| || ||||| || ||||| || |||| || Sbjct 100146 CTTCGAGGTCAAGGCCACCGCTGGTGACACCCATCTTGGTGGTGAGGACTTTGACAA 100202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975597728676836