Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3309 86.0 5e-11 >seq3309 Length=355646 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || ||||| || || | |||||||| || || || || | |||| || || Sbjct 222303 TTCTTGTCGAGACCGTAAGCGATGGCAGCAGCGGTAGGCTCGTTGACGATTCGCAGCACG 222244 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||||||||| || | || ||||| |||||||| |||| || | ||||| ||||| Sbjct 222243 TTAAGACCAGCGATGGTGCCAGCATCCTTAGTGGCCTGTCGCTGAGCGTCGTTGAAATAG 222184 Query 518285 GCAGGAACAGTAATAACGGC 518304 || ||||| || | |||||| Sbjct 222183 GCGGGAACGGTGACAACGGC 222164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780585845757502