Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4260 293 3e-74 seq3421 123 3e-23 >seq4260 Length=107242 Score = 293 bits (324), Expect = 3e-74 Identities = 916/1395 (66%), Gaps = 35/1395 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| |||| ||||| || | || || || | Sbjct 47894 CCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGAGCGCC 47835 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | ||| || | |||||| | || || ||||| Sbjct 47834 ATCGAGACGTACAACCTTATGTCGCAAAAGTACTTT-ACCCACGCCTCGCCTACGCTCTT 47776 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || || || | || || |||||| || | | ||||| || Sbjct 47775 CAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGA 47716 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | ||||| |||| || |||| |||||| ||||| ||| ||| || Sbjct 47715 CTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGG 47656 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 ||| ||||| | |||||||| || | | || | | |||||| || || || Sbjct 47655 TGGCATCGGCCTCAACATCCATTGCATCCGTGGCACC--GGCTCGTACATTGCCGGCACC 47598 Query 111909 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 || ||| |||| | || ||| | || ||||| ||||| || ||| ||| ||||||| Sbjct 47597 AACGGTG--TCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCT 47540 Query 111967 ATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 | || |||| | ||| ||||| | || | | || | || |||| |||| Sbjct 47539 ACGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCTATTTACATTGAACCAT 47483 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||| |||| || | |||||||| || |||| ||||| || | ||||||| || Sbjct 47482 GGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGC 47423 Query 112081 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 | ||| || || ||||||| || |||||| | || ||||||||||||||||| || ||| Sbjct 47422 G-TGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAG 47364 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| ||| | ||||| ||| | || || || || || ||||| |||| | Sbjct 47363 CAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCCGACTGCTAC 47304 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-AC 112258 ||||| |||||||| ||||||| ||||||| || |||| ||| ||| || Sbjct 47303 GGTGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCGA-AGCGCAC 47245 Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || ||| || || | | ||| | || || ||| |||| || |||||||| || | | Sbjct 47244 CGTCAAAGC-GCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACC 47186 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | || || ||||| |||||| |||| ||||| || || ||||| | || || Sbjct 47185 CTTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGA 47126 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| | |||||| | ||||| || ||| | || | | | || ||| ||| | Sbjct 47125 TCAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAG 47066 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 |||| |||||||| || ||||| || |||| || | || |||| ||| ||||| | | Sbjct 47065 TGTGCAACCTCGCCTCGATCGCACTGCCCACGTTCATTGACCCAGTGACCAAGACGTACG 47006 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | | || ||| ||| | || | || || ||||| |||| | || | Sbjct 47005 ACTTTAAGCGTCTGCACAGCGTTGCCAAGGCCATCTGCAAGAACCTGAACAAGATCATCG 46946 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | | || | || || || ||| || || || || || ||| | |||||||| || | Sbjct 46945 ACATTAACTACTATCCGGTCGAGGAGGCGCGCAAGTCCAACATGCGTCACCGTCCGATCG 46886 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTC 112675 | ||||||| || || || ||||||| ||||| || | | | | || ||||| || Sbjct 46885 GGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATGATCATGG--GGTATGCGTTTGAGTC 46828 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 | ||| || | | | || | || || |||||||| || || |||||||| || || Sbjct 46827 GGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGAGACCATCTACCACGCCGCACTGGA 46768 Query 112736 GGCGA--GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 |||| || | |||||||| ||| | || || || || | | || || || Sbjct 46767 -GCGATCGTGC-GAGTTGGCTGAGCAGCACGGCAGCTACGAGACGTACGCCGGCTCGCCC 46710 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGA 112852 ||||| || || | | | || | || ||||||| ||| | | | | | | || Sbjct 46709 GCTTCGCAGGGTGAGTTGCAGTACGACATGTGGG-GGGTCACGCCGTCGGACCTGTGGGA 46651 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 ||||| | ||||||| ||| || | || ||||| ||| || || |||| Sbjct 46650 CTGGGCGGAGCTCAAGGCCAAGATCGCCAAGCACGGGCTTCGCAACTCGCTGCTGCTGGC 46591 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 ||| ||||| || || || || || ||| |||| ||| || ||||| || || || Sbjct 46590 ACCGATGCCGACCGCTTCGACGAGTCAGATCCTGGGCTTTAACGAGTGCTTCGAGCCTTA 46531 Query 112973 CACGACGAACATCTA 112987 ||| | |||||||| Sbjct 46530 TACGTCCAACATCTA 46516 >seq3421 Length=130295 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || ||||| || |||| ||||| || ||||| ||||| ||||| || || ||| Sbjct 34446 TTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTC 34387 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | | || | |||||||||||||| ||||||||||| |||||| |||||||||||| Sbjct 34386 GCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAG 34327 Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || ||||| ||||||||||| || ||| || ||||| Sbjct 34326 CTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGC 34289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620705411512240