Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4260 174 2e-38 >seq4260 Length=107242 Score = 174 bits (192), Expect = 2e-38 Identities = 1126/1780 (63%), Gaps = 63/1780 (4%) Strand=Plus/Plus Query 109376 TAAATTGGATTGG--TCGA-GCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGA 109432 |||||||||| | |||| || || ||| | || ||||| || ||||||| |||| Sbjct 46139 TAAATTGGATCGCGTTCGACGC---CGGCTTGGTCCGCAGATAGTATGTACCCGTCTTGA 46195 Query 109433 GACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCA 109492 | || ||||| |||| | ||||| || | ||| | || ||||| | | Sbjct 46196 GTCCCTTTTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGG----TGCC 46251 Query 109493 TAAAC----AAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATG 109548 ||| | ||| | |||||| ||||| ||| || || || || || |||||| Sbjct 46252 GAAAGGTGAATGTTGAGCGACTGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATG 46311 Query 109549 TCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCG 109608 |||||||| ||| ||||| || |||||||| |||||||||| |||||||| || Sbjct 46312 TCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCC 46371 Query 109609 GGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGA---TCCTTCATC 109665 |||||| | | ||| || || || || || | | | |||| | | ||||||| Sbjct 46372 GGAATGCCTGGCACGTTCTGGATCGATCCGCCG---TGCGCGATGATACGGTTCTTCATC 46428 Query 109666 TCTTTCGA-CCAGAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACGA 109723 | ||| ||| || || || || ||| |||||| | ||| ||||| Sbjct 46429 G-TGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACAACCA-CGGGTTCACCACCT 46486 Query 109724 CAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACT 109783 || ||||| || || || || ||||||||| | ||| || || ||||| |||| Sbjct 46487 GGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAGCACT 46546 Query 109784 CATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGT 109843 | || ||| ||||| || || ||||| || ||||| || |||| || || || Sbjct 46547 CGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGT 46606 Query 109844 TTCGGAGACC---CTTCG---TCTTTACCCGCTCACGCATTGCGTCCCAATCATA-ACGA 109896 | || || || ||| | |||| || | | || | || |||| || | | | Sbjct 46607 TGCGAAGCCCGTGCTTGGCGATCTTGGCCT--TGA-GC--TCCG-CCCAGTCCCACAGGT 46660 Query 109897 CC-ACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGG 109955 || || | | ||| ||||||| || || | |||||| | ||| || Sbjct 46661 CCGACG-------GCGTGACCC-CCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGG 46712 Query 109956 AGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAG 110015 || || | | ||||||| || | ||| ||||||||| | || ||| || Sbjct 46713 CGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAACTCGCACGATCGCTCCAG 46772 Query 110016 TGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTC 110075 ||| || || || || |||||||| || || | |||| | |||| ||| | | || Sbjct 46773 TGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTC 46832 Query 110076 GAAGGGAAGACCACAA-AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGG 110134 || | | ||| || | || ||| ||||||| || ||||||||||||| || || | Sbjct 46833 AAACGCAT-ACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCG 46891 Query 110135 GGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGA 110194 | || || |||||| || || || || || || || |||| |||||||| Sbjct 46892 GACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGA 46951 Query 110195 CCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACG 110254 | || || ||||| | | ||| | | || || | | ||| ||| Sbjct 46952 TCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGTACG 47011 Query 110255 TTTTCGTCTCC---TTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAG 110311 | || ||| | | | ||| | |||| || || || || || || |||||||| | Sbjct 47012 TCTTGGTCACTGGGTCAATGA---ACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTG 47068 Query 110312 AAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGA 110371 |||||| || |||| || | || || |||||||||||||| | ||| || Sbjct 47069 CCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCG 47128 Query 110372 CACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGG 110431 || | ||||||||| || ||| |||| || ||||| || || ||| | ||| Sbjct 47129 TGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGT 47188 Query 110432 TACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTT 110490 | || || || |||||||||| ||| ||||| | ||| | | || || || ||| | | Sbjct 47189 TGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGC-GCTTTGAC-GGT 47246 Query 110491 GCG-TTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA 110549 ||| || | | |||| || ||||||| ||| | | |||||| || | ||||| Sbjct 47247 GCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTA 47306 Query 110550 CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTC 110609 || | ||||| || || ||| || | ||| ||||| | || || ||| Sbjct 47307 GCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTC 47366 Query 110610 AACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGC 110669 |||||||||||||| || ||||| | ||| | || |||| || ||||| ||| | Sbjct 47367 GACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCAC 47426 Query 110670 CTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGG 110729 ||| || | || ||||| ||| || || | || || | || |||||||||||||| Sbjct 47427 CTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGG 47486 Query 110730 TTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGC 110786 ||| | || | ||| | || || ||| || |||||| || ||||| || Sbjct 47487 TTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGC 47546 Query 110787 TGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCT 110846 ||| |||||||| | |||||| || | ||| || | | ||| || || || Sbjct 47547 AGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGC 47606 Query 110847 AATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTT 110906 ||| || || |||| ||| ||||| | | || || ||||| ||| ||| Sbjct 47607 AATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTT 47666 Query 110907 ACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGT 110965 || |||| | ||| |||| ||| | || || || || ||||| || |||| Sbjct 47667 GGAGATCATGGCACAAGTCT-TGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCA 47725 Query 110966 TGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAG 111025 ||| || || ||||| || || | ||| || | || || || || |||||||| |||| Sbjct 47726 TGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAG 47785 Query 111026 GTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTA 111085 | | || || | || ||| ||||| |||||| || |||| ||| | Sbjct 47786 GCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGA 47845 Query 111086 CATCTTTACCGTGAATACCAATGGCAACTCGCATGAACAT 111125 || | ||||| || || | || |||||||||| ||| Sbjct 47846 TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCAT 47885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588940904392600