Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4260 226 3e-54 seq3421 102 1e-16 >seq4260 Length=107242 Score = 226 bits (250), Expect = 3e-54 Identities = 898/1394 (64%), Gaps = 33/1394 (2%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||| || || || ||||| || ||| |||| ||| || || || Sbjct 46516 TAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAA 46575 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| ||||||| || || ||| ||||| || | | ||| || Sbjct 46576 GCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCC 46635 Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTT-GGTTTCACCTTCCCACATATCAAATTGAAG 106113 ||||| | ||||||| | | | || | ||| ||||||| || | || | Sbjct 46636 TTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGACCC-CCCACATGTCGTACTGCAA 46694 Query 106114 CACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAA 106173 | | || || || | ||| || || | | ||||| ||| || || |||||||| Sbjct 46695 CTCACCCTGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAA 46754 Query 106174 TTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA-TC 106231 || || | |||| ||||| | ||||| || ||||| |||||||| | | |||| || Sbjct 46755 CTCGCACGATCGC-TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTC 46813 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291 || | || | | || ||||| || || | | || || ||||||| || || Sbjct 46814 GCCGAGCCT-CGGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCCC 46872 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 106351 |||||||| | || || || | ||| ||||| || ||||| ||||| ||| || ||| Sbjct 46873 TGAACACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGGA 46932 Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA 106411 || | || |||| |||| ||| || || ||| | ||| | | || Sbjct 46933 TAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTGC 46992 Query 106412 AGTTTTTCATAATCAAAAGTGCGAGTCTCT---TCATTGACATACTTTGGAAGGGCGATT 106468 || | | | || | || ||| || ||| ||| || | || || ||||| Sbjct 46993 AGACGCTTAAAGTCGTACGTCTTGGTCACTGGGTCAATGA---ACGTGGGCAGTGCGATC 47049 Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || || | ||||| || ||| ||| || | | ||||||| | || || |||||| Sbjct 47050 GAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACAC 47109 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 |||||||| | ||| ||||| || | ||||| ||||| ||||| |||| || ||| Sbjct 47110 AAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCC 47169 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 ||||| || ||| | || | |||||||| |||||||||| ||| || || | ||| | | Sbjct 47170 TTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGC 47229 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 || || ||| || || || | || ||||| |||||||| ||||||| Sbjct 47230 TTCTGC-GCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCG 47288 Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767 |||||||| ||||| ||||| ||||| || || || || || | || || Sbjct 47289 CTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGA 47348 Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827 ||| | || || ||| |||| ||||||||| || || || | ||| || | | || Sbjct 47349 CCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAA 47408 Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 106887 ||| || | || |||| || | || ||||| || | || |||||||| | Sbjct 47409 GAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAA 47468 Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CC 106941 || |||| ||||||||| |||| || | || | | || ||||| || Sbjct 47469 GACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACC---GGGACGCTTGTTGCC 47525 Query 106942 AGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT- 107000 | | || | || |||||||| ||| ||| || ||||| ||||| || | ||| || | Sbjct 47526 ACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT 47585 Query 107001 -CTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGGATGT 107057 |||| ||| || || || || |||||| || | | | |||||||| Sbjct 47586 GCTGA--CACCGTTGGTGCCGGCAATGTACGAG--CCGGTGCCACGGATGCAATGGATGT 47641 Query 107058 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 107117 | || || || || ||| ||| ||||| ||||| | | || || | |||| Sbjct 47642 TGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGA 47701 Query 107118 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 107177 | |||| ||| ||||| ||||| ||| | ||||||||| || | |||||| | Sbjct 47702 TGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCG 47761 Query 107178 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTG 107236 | ||||| || |||||||| || || | ||||| | || ||| ||| ||||| | Sbjct 47762 GGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGT-AAAGTACTTTTGCGACATAAGG 47820 Query 107237 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATA 107296 | ||| ||||| | | | || ||||| | ||||||||||||| || || ||||| Sbjct 47821 TTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATG 47880 Query 107297 AACATGTATTGGGG 107310 | ||||| ||||| Sbjct 47881 AGCATGTGCTGGGG 47894 >seq3421 Length=130295 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| ||| ||| |||||||| || || || || || || || ||||| || || Sbjct 34288 GGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACC 34347 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | | |||||| || ||||| ||||| Sbjct 34348 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGAT 34407 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 ||||| || |||||||| | || ||||||||||| Sbjct 34408 GCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAA 34446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589945644519080