Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4260 325 7e-84 seq3421 232 1e-55 >seq4260 Length=107242 Score = 325 bits (360), Expect = 7e-84 Identities = 1155/1767 (65%), Gaps = 87/1767 (5%) Strand=Plus/Plus Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT-TT 212790 ||| || |||||||| ||||| | ||||| || |||||| || |||||| | | || Sbjct 46299 GTCCGCAGCCATGTCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTT 46358 Query 212791 CTT--TGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845 ||| || ||||| || | ||| || | |||||| | || || | ||| ||| | Sbjct 46359 CTTGATGCGGTCC---GGAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGAT 46415 Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTG-ACCAGGT 212904 | | | | |||| |||||| |||||| || || | || | | | || Sbjct 46416 ACGGTTCTTCATCGTGTC---GTTCCACAGGCCC-TGCTCCACCAGCTCGCGCAACAACC 46471 Query 212905 GAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGT 212964 ||||| || | |||||| ||||| | |||||| | || ||| | ||| || || | Sbjct 46472 ACGGGTTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTAT 46531 Query 212965 AGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAG 213024 | ||||||| || |||||| ||||| ||||| || || || ||||| || | Sbjct 46532 AAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTG 46591 Query 213025 CCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGT 213084 ||| ||| || ||| | | ||||||| | |||| | | ||||| ||||||| Sbjct 46592 CCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGT 46651 Query 213085 CCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT 213144 |||| ||||||| | | || ||||||||| ||||||| || | Sbjct 46652 CCCA---------CAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCT 46702 Query 213145 TGCTCACGGGGCTGCCCTG-GTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 || | |||| || | ||| | |||| ||| |||| || |||| |||||| Sbjct 46703 -GCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAACTCGCAC 46761 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCC 213263 || || ||| || |||| ||||||||| ||||| |||| | ||| || | ||| Sbjct 46762 GATCGCTCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCC 46821 Query 213264 TCTGGGGACGTGAAGGGCAT-CATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 || | ||| | || |||| | |||| |||| |||| || || ||||| || || Sbjct 46822 TCGGCCGAC-TCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACC 46880 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGT 213381 ||| ||||| || | ||| | || ||| |||||| | || |||||| | || || ||| Sbjct 46881 GATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGC-CTCCTCGACCGGATAGTAGT 46939 Query 213382 TGCAGTCGATGATCTTGTTGAGGTT---GCGGGTGGCCACTTTGGTGACATGGGCCAGGT 213438 | ||||||||||||||| ||||| || | ||||| |||| || | ||| Sbjct 46940 TAATGTCGATGATCTTGTTCAGGTTCTTGCAGATGGCC---TTGGCAACGCTGTGCAG-- 46994 Query 213439 ACTCGTGATTGAACACGTA-GCCCCCGTC-CTGCA-CAA---ACTCAGGCAGGGCGATGC 213492 || | || || |||| | | ||| ||| ||| || ||||| ||||| Sbjct 46995 ACGC----TTAAAGTCGTACGTCTTGGTCACTGGGTCAATGAACGTGGGCAGTGCGATCG 47050 Query 213493 TGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCAC 213551 ||| |||||||| || |||||||| | | ||| | ||||||| ||||||||||| ||| Sbjct 47051 AGGCGAGGTTGCACACTGCCACCTCGTCGGGAG-CGCTGTACTCGATGATCTCGGTACAC 47109 Query 213552 AGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCC 213611 | |||| ||| ||| ||||| ||||||| ||||| ||| |||||| | ||| Sbjct 47110 AAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCC 47169 Query 213612 TTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGG 213671 ||||| || ||| | ||| || ||||| ||| ||| | || || | |||||| Sbjct 47170 TTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGC 47229 Query 213672 TACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGC 213731 | | || ||||| ||| | ||| | || |||||||| | |||||||| Sbjct 47230 TTCTGCGCTTTGACGGTGCGCTTCG-AGCGACCCTCG--GCCTCGTAGCGCTCGTAGAGG 47286 Query 213732 TCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGG 213791 | || |||| || || | |||| || || || ||| |||||||| Sbjct 47287 CGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGC 47346 Query 213792 CTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGT 213850 |||||| |||| | ||| ||| |||| |||||| || || || ||||| || || Sbjct 47347 GACCAGTCGCCGTTCTGCTC-GACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATA 47405 Query 213851 GAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTC 213910 ||| || || | | | | ||| ||| ||| ||| |||||||| || || || || Sbjct 47406 GAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 47465 Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CC 213967 ||||| ||||| |||||| || || ||||| || |||||||| || || | |||| || Sbjct 47466 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCC 47525 Query 213968 GCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 |||||||| || | || ||||||||| ||| || | ||| || | ||||| Sbjct 47526 ACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT 47585 Query 214028 GGACTGTC--CGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA- 214084 | ||| | ||||||| || || || |||||||||| | | | || ||| ||||| Sbjct 47586 G--CTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCAC---GGATGCA-ATGGAT 47639 Query 214085 ---GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCAT 214141 ||| || ||||||||||| ||||||||||||||| || | | | || || Sbjct 47640 GTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTA 47699 Query 214142 GATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCT 214201 ||||||| | || |||||| | | | | | | |||||| ||||||||| || Sbjct 47700 GATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTG 47759 Query 214202 GGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAG 214261 | | || | |||||| ||||| || ||| ||| | | |||| | || | || Sbjct 47760 CGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAG 47819 Query 214262 CCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCAT 214321 |||| ||||| | | | |||||| || |||||| | |||| | ||| Sbjct 47820 GTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCAT 47879 Query 214322 CAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGA 214375 |||||||||||||| | ||| || | |||| ||| || ||||| ||||| Sbjct 47880 GAGCATGTGCTGGGGACGCTC--TGCGACCTT----GCCGTTGATGCGGAGCAAATAGGA 47933 Query 214376 GCGCTCCAGAGTCTTGAACCC---AAAGTAGGAGTAGGTATGATCGTTCCCGTGTATGAG 214432 ||||| || |||||||| || ||||| | ||| || | |||| ||| |||| Sbjct 47934 ACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGT-GGAAGTCACGTT--CGTAGATGAT 47990 Query 214433 GGCAGCGTCCAGCTCTTCCGCGTGCTC 214459 ||| | ||| |||| ||| |||||| Sbjct 47991 GGCCGAGTCGAGCTGGTCCTTGTGCTC 48017 >seq3421 Length=130295 Score = 232 bits (256), Expect = 1e-55 Identities = 554/828 (67%), Gaps = 20/828 (2%) Strand=Plus/Plus Query 47858 TTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGT-- 47915 |||||||||||||| ||||| || |||||||| ||||| ||| ||| || || Sbjct 34016 TTCTCAAAGAAGTTGGTCTTGCCTTCCAACGAAATGTTGGTCATAAAGTCAAACGGACAT 34075 Query 47916 -TGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTAC 47974 ||| || | ||| | | || | | | |||||| | |||| ||||| ||| Sbjct 34076 GTGGAGCCGTAGTGCACTGGGTTT---CCGAGCGATACCAGCAAGCGATCGGCGACATAC 34132 Query 47975 TCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTT 48034 || ||||||| ||||||| || ||||||| || ||||| | ||||| | | | Sbjct 34133 TCAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCGACGGGGATTGATTCG 34192 Query 48035 GTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCT 48094 || ||| ||||||| || | |||||| || | |||| || || | || Sbjct 34193 CACAGGAACGCCTTCTCGATTTCCACGGCCTCAGTGATGATCTTGAGCAC-CGTGTCTGG 34251 Query 48095 GAGGGTTTGT-TGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCC 48153 | | | | | | ||||| || |||| | ||||||||||||| |||| | || Sbjct 34252 GTGCGCGCGCCTCCTGAGGTGGCTGA---AGAGAAGGCAGGCAAAGTCCGTGTGAAGACC 34308 Query 48154 TTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTT 48213 ||||| || ||||||| |||||||||| |||||| ||||||| || | || || Sbjct 34309 CTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTTCTT 34368 Query 48214 GAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||| || | ||||| ||||| ||||| ||||||||||| || || || ||||| Sbjct 34369 GAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAACGC 34428 Query 48274 GGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGC 48333 | || | ||| |||||| || |||||| |||||| ||| |||||||| || Sbjct 34429 GACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGCCCAGTCGGC 34488 Query 48334 CTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACT-CACCTG 48392 ||||| ||||| | || || ||||| | ||| || || | | | || | | | Sbjct 34489 CTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTGCTCAGG 34548 Query 48393 CGTCCGCAACATAG-GTAG-TGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTAT 48450 | || | || || | |||||||| | ||| |||| ||||| | ||||| || Sbjct 34549 CTCACGGATGTAAGTGTCGATGAGCAGC---GAGTAGGTCTCCGAGTGGATGTTCTCCAT 34605 Query 48451 AGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCT 48510 ||||||||| ||||||||| | ||||| |||| ||||| | ||| | Sbjct 34606 CATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACTGAAACG 34665 Query 48511 CTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTT 48570 ||| | || ||||| ||||| || ||||| || ||||| ||||| ||||| ||||| Sbjct 34666 CTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCACATGCGA 34725 Query 48571 AAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAG 48627 | || |||||||| |||| | | || || |||| | || | ||| ||| || Sbjct 34726 GATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCTTGGAAAG 34785 Query 48628 GTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||| | || || | ||||||||||| || || || |||||||| Sbjct 34786 GTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 34833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931477292289280