Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4260 286 6e-72 seq3421 248 2e-60 >seq4260 Length=107242 Score = 286 bits (316), Expect = 6e-72 Identities = 795/1203 (66%), Gaps = 31/1203 (3%) Strand=Plus/Plus Query 221370 CGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGT 221429 |||||| ||||||| |||| | | || ||| |||| || || ||| || |||| Sbjct 46721 CGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAACTCGCACGATCGCTCCAGTGCGGCGT 46780 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 |||||||||||||||||||| | ||| |||| | ||||||| || | || ||| Sbjct 46781 GGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGAC-TCAAACGCA 46839 Query 221490 TACGC-AGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTG 221547 ||| | | ||| |||| | | || || || ||||| || ||||| ||||| || | ||| Sbjct 46840 TACCCCATGATCATGAACG-CATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTG 46898 Query 221548 TCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTT 221607 | | ||||||| | ||| || || ||||| |||| | |||||| | ||||| Sbjct 46899 ACGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTT 46958 Query 221608 GAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTC 221667 |||||| |||| | || | || | ||| || || || Sbjct 46959 CAGGTTCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTA------------AAGTC 47006 Query 221668 GCCGCCGTCGTGG--AGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 | |||| ||| | || || | || | | || || | ||| ||||| ||| Sbjct 47007 GTA--CGTCTTGGTCACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCAC 47064 Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 || ||||||||||| | | |||| |||||||| ||||| | |||| ||||||| Sbjct 47065 ACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTG 47124 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845 || || || |||| || || || |||||| ||||| ||||||||||| || || || Sbjct 47125 ATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAA 47184 Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCAC 221904 || ||| ||||| ||| | | | || || || |||||| | |||| || | || Sbjct 47185 GGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCT-TCTGCGCTTTGAC 47243 Query 221905 CGTCCTCTT-GACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTT 221963 || | ||| || | |||||||| || | | || ||||| ||||||| | Sbjct 47244 GGTGCGCTTCGAGCG-ACCCTCGGCCTCGTAGCGCTCG---TAGAGGCGCTCAAACTCGT 47299 Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGT 222023 ||||||| ||| |||| || || ||| | ||| ||||| || ||||| || Sbjct 47300 CACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGT 47359 Query 222024 TGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGG 222083 | | | |||||||| ||||||||| || || | ||| || || | ||||| || | | Sbjct 47360 TCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCG 47419 Query 222084 TCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGT 222143 ||| ||||||| |||| ||| || | ||| || | |||||||| | ||| | || Sbjct 47420 CACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGT 47479 Query 222144 GCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCA 222203 |||| || || | || | || | || ||||| ||||||||||||||||| || || Sbjct 47480 GCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGT 47539 Query 222204 TCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTG 222262 | | ||| | |||||||| ||| || | || || | |||||| ||||||| Sbjct 47540 AGCGC-GCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTG 47598 Query 222263 GTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGATACCACC 222321 ||||| |||||||| ||| | | | | | | ||| | | |||||| ||||| Sbjct 47599 GTGCCGGCAATGTACGAGCCGGTGCCACGGATG-CAATGGATGTTGAGGCCGATGCCACC 47657 Query 222322 GGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTC 222381 ||| || ||||||||||| || ||||||| || || |||||| || || ||||| Sbjct 47658 GGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTC 47717 Query 222382 CTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAA 222441 ||||| | | | | || || || ||||| | ||| | | | || || |||||| || Sbjct 47718 ATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAA 47777 Query 222442 CAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGAC 222501 ||||| || |||||| |||||||| ||||| || | ||||||||| | | | Sbjct 47778 GAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGC 47837 Query 222502 TCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCT 222561 || |||||| | ||||| || | ||| || |||| ||||| |||||| | Sbjct 47838 GCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACG 47897 Query 222562 CTC 222564 ||| Sbjct 47898 CTC 47900 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||||||||| ||||| || |||| |||||| | || ||| | ||| || || | || Sbjct 46476 GTTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGG 46535 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||| ||||||||||||| ||| ||||| ||||| ||||||| Sbjct 46536 CTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAG 46595 Query 221236 CAGCAGACTGTTGCGCAGTCCG 221257 |||||| |||||| || ||| Sbjct 46596 CAGCAGCGAGTTGCGAAGCCCG 46617 >seq3421 Length=130295 Score = 248 bits (274), Expect = 2e-60 Identities = 569/851 (67%), Gaps = 36/851 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || ||||||||| || ||||| || || Sbjct 34842 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34783 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAA-GAC---GAGCAGCATTTTCTCAA 25592 |||||||| | ||| |||| || | | | || ||| |||| || ||| || Sbjct 34782 TCCAAGGACCTCCACGACTGGGACAA-CAAGCTGAACGACAATGAGCGCCACTTTATCTC 34724 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | | ||| | || ||||| || || || |||||||| || |||||||| || ||| | Sbjct 34723 GCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG 34664 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| |||||| ||| || ||||| || ||||||||||||||||| || Sbjct 34663 TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 34604 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACA-TTACAGACGTC- 25770 || || | ||||| ||| || | ||| || || || ||| ||||| ||| Sbjct 34603 GGAGAACATCCACTCGGAGACCTACTC---GCTGCTCAT--CG-ACACTTACATCCGTGA 34550 Query 25771 GCCG----AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 ||| || | || ||||||| ||| ||||| ||| || | ||||| ||| Sbjct 34549 GCCTGAGCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAA 34490 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| ||||| | ||||||| | | || | || || || | |||||| ||||| Sbjct 34489 GGCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGTGCCACTTTCGCCGAGCGTCTGGT 34430 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 || ||||| || || ||||||||||||||| || || || || | ||||||||||| Sbjct 34429 CGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCT 34370 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || || ||||||||| || || ||||||||||||||| | ||||| Sbjct 34369 CAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGA 34310 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 |||||| |||| || ||||||||||| |||| || ||||| ||| | | | Sbjct 34309 GGGTCTTCACACGGACTTTGCCTGCCTTCTCTTCA---GCCAC---CTCAGGAGGCGCGC 34256 Query 26067 TCA---AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCN 26123 || ||| || || || ||||||| ||||| ||||| |||||||||| ||| | Sbjct 34255 GCACCCAGACACGGTGCTCAAGATCATCACTGAGGCCGTGGAAATCGAGAAGGCGTTCCT 34196 Query 26124 NNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACAT 26183 | || ||||||| || |||||| |||||||||| Sbjct 34195 GTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCAAGCTCATGTGCCAATACAT 34136 Query 26184 TGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC 26243 ||||||||| ||||| | ||||| ||| ||| | |||| | || |||| | Sbjct 34135 TGAGTATGTCGCCGATCGCTTGCTGGTATCGCTCGGAAAC-CCAG----TGCACTACGGC 34081 Query 26244 T-AAC----CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 | || ||||| ||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 34080 TCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTTCTTT 34021 Query 26299 GAAAAGAGGGT 26309 || || | ||| Sbjct 34020 GAGAAAAAGGT 34010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928789452460480