Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4260 196 6e-45 seq3421 102 1e-16 >seq4260 Length=107242 Score = 196 bits (216), Expect = 6e-45 Identities = 894/1396 (64%), Gaps = 35/1396 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| ||||||||||||| | ||||| || | | Sbjct 47894 CCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGAGCGCC 47835 Query 75272 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || ||||| ||| ||| || | ||||| | || || ||||| Sbjct 47834 ATCGAGACGTACAACCTTATGTCGCAAAAGTACTTT-ACCCACGCCTCGCCTACGCTCTT 47776 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || ||||| || |||||| | || ||||||||| | ||| ||||| || Sbjct 47775 CAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGA 47716 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| |||| ||||| | || || | | ||||| ||||| ||| ||| || Sbjct 47715 CTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGG 47656 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 75508 || || || | |||||||| | | | || |||||| || || || Sbjct 47655 TGGCATCGGCCTCAACATCCATTGCATCCGTGGCACCGG--CTCGTACATTGCCGGCACC 47598 Query 75509 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 || ||| |||| | || ||| | || ||||| ||||| || ||| ||| ||||||| Sbjct 47597 AACGGTG--TCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCT 47540 Query 75567 ATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 | || | || | || ||||| | || || | || | ||| | ||||||| Sbjct 47539 ACGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCTATTTACATTGAACCAT 47483 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTC 75680 |||| | || || | |||||||| || | || ||||| || | || |||| | Sbjct 47482 GGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGC 47423 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | | || ||||| | | || ||| | || || || ||||||||| |||| ||| Sbjct 47422 GTGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAGC 47363 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800 || || | ||||| || | || || || || || ||||| ||||| | Sbjct 47362 AGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCCGACTGCTACG 47303 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-ACT 75859 |||| |||||||| ||||||| || || | |||||| | | || ||| || Sbjct 47302 GTGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCGAA-GCGCACC 47244 Query 75860 GTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 || | | ||| || | | ||| | || || ||| | |||||||| ||||| || | || Sbjct 47243 GT-CAAAGCGCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACCC 47185 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 | || || |||||||| || ||| ||||| ||||| ||||| | || || || Sbjct 47184 TTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGAT 47125 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 |||| |||| || | || || || || | ||||||| | | || ||| ||| || Sbjct 47124 CAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAGT 47065 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA---AGAGACTCGCACTTT 76095 ||||| | || || ||||| || || | || ||| ||| || ||| || | Sbjct 47064 GTGCAACCTCGCCTCGATCGCACTGCCCACGT---TCATTGACCCAGTGACCAAGACGTA 47008 Query 76096 TGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCAT 76155 || | | | || || | | ||| | ||| || || ||| |||| Sbjct 47007 CGACTTTAAGCGTCTGCACAGCGTTGCCAAGGCCATCTGCAAGAACCTGAACAAGATCAT 46948 Query 76156 TGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTAT 76215 |||| || | ||||| || ||| ||||| ||||| || ||||| ||| | || || Sbjct 46947 CGACATTAACTACTATCCGGTCGAGGAGGCGCGCAAGTCCAACATGCGTCACCGTCCGAT 46888 Query 76216 TGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTC 76275 || | |||||||| || || ||||||| || || | | || || ||||| || Sbjct 46887 CGGGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATGATCATGGGGTATGCGTTTGAGTC 46828 Query 76276 AGATGAAGCCAAGGAGA-TGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGG 76334 | | || | || || |||| | | |||||||| ||||| || ||||| | |||| Sbjct 46827 GGCCG-AGGCTCGGCGACTGAACGTGCAGATCTTTGAGACCATCTACCACGCCGCACTGG 46769 Query 76335 AGGCGA-GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCC 76393 | |||| || || |||||||| || || ||| ||||| | | || || ||| Sbjct 46768 A-GCGATCGTGCGAGTTGGCTGAGCAGCACGGCAGCTACGAGACGTACGCCGGCTCGCCC 46710 Query 76394 GCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC-AAGCTCAACTACGA 76452 || || || || | | | |||| || ||||||| ||| | || | | | || Sbjct 46709 GCTTCGCAGGGTGAGTTGCAGTACGACATGTGGG-GGGTCACGCCGTCGGACCTGTGGGA 46651 Query 76453 CTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 76512 ||||| | ||||||| ||| || | || ||||| ||| || || |||| Sbjct 46650 CTGGGCGGAGCTCAAGGCCAAGATCGCCAAGCACGGGCTTCGCAACTCGCTGCTGCTGGC 46591 Query 76513 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATA 76572 ||| ||||| || || || || || ||| |||| ||| || ||||| || || || Sbjct 46590 ACCGATGCCGACCGCTTCGACGAGTCAGATCCTGGGCTTTAACGAGTGCTTCGAGCCTTA 46531 Query 76573 CACAACAAACATCTAC 76588 || | ||||||||| Sbjct 46530 TACGTCCAACATCTAC 46515 >seq3421 Length=130295 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||||||||| || | |||||||| || ||||| ||||| ||||| || |||||| Sbjct 34446 TTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTC 34387 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 | | || | ||| | |||||||| ||||||||||| || || ||||| || || Sbjct 34386 GCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAG 34327 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || || || |||||||| ||| ||| |||||| Sbjct 34326 CTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGCC 34288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596534051908960