Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4260 214 2e-49 seq3421 145 9e-29 seq4646 125 9e-23 seq330 107 2e-17 seq4481 86.0 8e-11 >seq4260 Length=107242 Score = 214 bits (236), Expect = 2e-49 Identities = 282/393 (72%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||||||||| |||| ||| |||||||||||||||||||| | ||||||| Sbjct 47529 CTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCT 47588 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||||||||||| || | ||| | ||||| | | || | || | | ||| Sbjct 47589 GACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCC 47648 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| ||||||| ||||||||| | || || ||||| || ||||||||||| || Sbjct 47649 GATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTC 47708 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||||||| |||||||| || || |||||||||||| |||||||||| || || Sbjct 47709 GATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACC 47768 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||||||| |||| || ||| || ||| ||||||| || ||| || Sbjct 47769 GGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGT 47828 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| ||| | | | |||| | || | | ||||| ||||| Sbjct 47829 CTCGATGGCGCTCTCGA------TGTCCTGG---------CCGTGGATGCCGACAGCGAC 47873 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGAC 1630457 ||||||||||||| |||||| ||||| |||| Sbjct 47874 TCGCATGAGCATGTGCTGGGGACGCTCTGCGAC 47906 Score = 116 bits (128), Expect = 5e-20 Identities = 289/444 (65%), Gaps = 10/444 (2%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| || ||||||||| |||| ||||| || | |||| || ||||||| ||||||| Sbjct 47090 ACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGC 47149 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | | ||||| |||||||||||| || ||| | || ||| |||||| |||| | | Sbjct 47150 TCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACT 47209 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCG---CGCGCGGCCCTNNN 1628338 ||| |||||| |||||| || |||| ||| || || || ||| |||| Sbjct 47210 CGAGGATGGCGTACCAGAGCTTCTGCGC---TTTGACGGTGCGCTTCGAGCGACCCTCGG 47266 Query 1628339 NNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCG 1628398 ||||| | | |||||||| ||| ||| || || Sbjct 47267 CCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGC 47326 Query 1628399 CCTCGGACGGACAAAAGAGCGACCAGTCGCC--ACCGGTCACCGCGCGGCGCATAAAGAG 1628456 |||| || || | ||||||||||||||| | | || | | | ||| ||||| Sbjct 47327 ACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTC--TTCATGAAGAG 47384 Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516 ||| | ||| ||||| || ||||| || ||||| || ||||||||| |||||||| Sbjct 47385 ATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTT 47444 Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576 ||| |||||||| | || | | ||| | |||||| || || | ||| ||||| Sbjct 47445 CTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAA 47504 Query 1628577 GGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| || |||||| ||| || Sbjct 47505 GGCACCGGGACGCTTGTTGCCACC 47528 >seq3421 Length=130295 Score = 145 bits (160), Expect = 9e-29 Identities = 204/286 (71%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| || | ||| ||||||||||| |||||||| Sbjct 34306 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTT 34365 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | ||| ||||||||||||||||||||||||||||||||| Sbjct 34366 CTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 34425 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| || |||||||| || ||| | | || | | ||||||| | ||||| Sbjct 34426 CGCGACCAGACGCTCGGCGAAAGTGGC---ACGCTTGTCGCTGATCCATCGAAGAGCCCA 34482 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||||||| | | | || ||| | || |||| |||| ||| || | || | Sbjct 34483 GTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTG 34542 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | || || || || |||||||| || ||||| ||||||||| Sbjct 34543 CTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCC 34588 Score = 113 bits (124), Expect = 6e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 868798 TCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGC 868857 ||||||||| | |||| ||| ||||||||| |||| ||||| ||||||||||| | Sbjct 34099 TCCGAGCGATACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCT 34158 Query 868858 GTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGAC 868917 |||||| ||||||||||| || || | || |||| || ||| | |||||||| || || Sbjct 34159 GTTCATACCGATGAGCGCGACGGGGATTGATTCGCACAGGAACGCCTTCTCGATTTCCAC 34218 Query 868918 GGCCTCGACGATGATCT 868934 |||||| |||||||| Sbjct 34219 GGCCTCAGTGATGATCT 34235 Score = 113 bits (124), Expect = 6e-19 Identities = 177/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || ||||||||| ||||| ||| | |||| || | | Sbjct 34587 CCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCT 34646 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || ||| |||| || | | ||||||||| ||||| || || || |||| Sbjct 34647 GAACTTCCGAACTGAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGA 34706 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGT 869807 | || || || || ||| ||||||||||||||| | |||| | ||| |||||| Sbjct 34707 AGAACGCAAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGT 34766 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | | ||| | ||||| | |||||| |||||||||| || ||||||||||| | Sbjct 34767 CGTGGAGGTCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCT 34826 Query 869868 TGTACATCTCCCA 869880 ||||||| | ||| Sbjct 34827 TGTACATTTGCCA 34839 >seq4646 Length=73901 Score = 125 bits (138), Expect = 9e-23 Identities = 116/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 ||||| ||||| ||||| |||||| ||| |||||| |||| || || |||||||| Sbjct 67980 ATCGGTGGCACAGTGACATGCGTGATCCGCGGTGTGCCGTCAGGGCTGGGAGAGCCGTGT 68039 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 || |||||| |||||||| ||| || ||||||||||| |||||||| |||||||| Sbjct 68040 TTCGACAAGCTCGAGGCCAAGCTGGCGCACGCCATGCTCAGCATCCCGGCAACCAAGGGG 68099 Query 19173 TTCGAGATTGGCAGCGGGTTTGCGGG 19198 |||||||| ||| ||||||| |||| Sbjct 68100 TTCGAGATCGGC-TCGGGTTTCCGGG 68124 Score = 109 bits (120), Expect = 7e-18 Identities = 264/396 (67%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 18082 TTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGC 18141 ||| | |||||||| | |||||||||||| | || || || || ||| |||| ||| Sbjct 67170 TTTCGCGTCACCACGTACGGCGAGTCGCACTGCGCCTCGGTAGGTTGTATCGTCGATGGC 67229 Query 18142 GTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGA 18201 ||||| ||| ||||| |||| || | | |||||| ||| | ||| | || || || Sbjct 67230 GTGCCTCCGGGCATGGCACTCGCTGCGCACGACATTCAGACGCAGCTCTCACGTCGTCGG 67289 Query 18202 CCGGGCCAGGGCGCACTT-TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTC 18260 |||||||| | || | || | ||||||||| | || || || ||| ||||| || Sbjct 67290 CCGGGCCA-GTCGAATTTGACGACGCCGCGCGATGAAAAGGACCGTGTCGAGATCCAATC 67348 Query 18261 GGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGA 18320 ||| || |||| | ||||| ||| |||| ||| | | | || ||||| || Sbjct 67349 GGGTGTCGAACGCGGCGTGACGCTGGGCACGCCGATCGCCATGCTGGTACGCAACCAGGA 67408 Query 18321 CCAGCGGCCCGTCGACTATTCCGAC-ATGTGC-----AAGGTGCCGCGGCCCTCACACGC 18374 ||||| || |||||| | ||| || || | | || || || || ||||| Sbjct 67409 TCAGCGTCCACACGACTACACGGACGATACGCTGGATACGTATCCACGCCCTTCGCACGC 67468 Query 18375 CGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTC 18434 ||||| || || ||| |||||| | ||||||| |||||||| || || || Sbjct 67469 CGACTTTACGTATCTGGAAAAGTACAACGTCAAGGCAAGCTCGGGCGGTGGAAGGAGCTC 67528 Query 18435 TGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 || || |||||| | || ||||| || ||||| Sbjct 67529 GGCTCGTGAGACCATTGGACGAGTCGCTGCGGGCGC 67564 >seq330 Length=211765 Score = 107 bits (118), Expect = 2e-17 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 507703 CACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGA 507762 |||| | || ||||||| |||||| |||||||||||||||||||||| ||||| Sbjct 12241 CACCTTCCGTCTCAACCTCAGTGTCACGCCTCCCTACAACGCCGACTTTGACGGTGACGA 12182 Query 507763 GATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAG 507822 ||||||| |||||||||| ||| || | | || |||||| | |||| | | | Sbjct 12181 GATGAACTTGCACGTGCCACAGAGTGAAGAGACCCGTGCCGAGCTCTCGCAGATCGCCTG 12122 Query 507823 CGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGA 507882 || ||| | ||| || ||||| ||||||||||||||| |||| ||| | || ||| Sbjct 12121 GGTCCCGCGCCAGATTGTCTCGCCTCAGGCCAACAAGCCCGTCATGGGCATTGTGCAGGA 12062 Query 507883 CGCCCTC 507889 | | ||| Sbjct 12061 CACGCTC 12055 >seq4481 Length=90198 Score = 86.0 bits (94), Expect = 8e-11 Identities = 153/221 (69%), Gaps = 12/221 (5%) Strand=Plus/Plus Query 1573932 TGTCTGGCGCGTGTCCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCG 1573991 ||||| || |||| || |||||| || | | |||| ||||||||||||||||| Sbjct 19578 TGTCTTGCTCGTGCGCTGCTGGGCGAAGCATACAAAGAGGGTGTGCTCGAACTCAACGCT 19637 Query 1573992 TCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCC----AA 1574047 || ||||| || || ||||| || || || || | |||||| ||| | | || Sbjct 19638 TCCGACGAACGAGGTGTCGATGTGGTTCGAAACAAGATCAAG----ACGTTTGCGCAAAA 19693 Query 1574048 G--AGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105 | || ||| || || |||||| | || ||| | ||||||||||||||||| || | Sbjct 19694 GAAAGTGTCG--CTCCCACCCGGAAGGCATAAGATCATCATCCTCGACGAGGCGGATAGT 19751 Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGA 1574146 | || | || || || ||||| ||||| |||||||| Sbjct 19752 ATGACTCCTGCTGCGCAACAGGCGCTGCGAAGGACCATGGA 19792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106747997656139