Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4260 206 2e-48 seq1658 138 1e-27 seq1857 105 6e-18 seq440 93.3 4e-14 >seq4260 Length=107242 Score = 206 bits (228), Expect = 2e-48 Identities = 951/1474 (65%), Gaps = 70/1474 (5%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || ||||| || | || || ||| ||| |||||| || ||||||| || Sbjct 46483 ACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAG 46542 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | ||||| ||||| |||||| ||| | ||||||||||| |||| || || Sbjct 46543 CACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGC 46602 Query 138628 GAATTCCGTAAACCGTGAAGCTTGAT--TCGTT-CCTTGAGCGACGACCAGTCCCACAAA 138684 || || || | ||||| |||| || | |||||||| || ||||||||||| Sbjct 46603 GAGTTGCGAAGCCCGTG---CTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGG 46659 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCT 138744 || || | |||||| |||||||| ||| ||| ||||| ||| Sbjct 46660 TCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAGCCG 46719 Query 138745 TCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGAGCGCACC 138803 |||||| ||||| || || | ||||||||| | |||| || || || | Sbjct 46720 GCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAACTCGCACGATCGC-TCCAGTGCGGC 46778 Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863 | ||| || || || |||||| || || || |||||||| ||| ||| Sbjct 46779 GTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTCAAACG- 46837 Query 138864 CATGCGG-AGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922 ||| | | ||| ||||||| || || || || || || || | |||| || || | Sbjct 46838 CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGT 46897 Query 138923 GGCGCAGATTTGACGCTTTTGCGGCT--TCGATAGGATAATAGTTTACATCGATGATTTT 138980 | |||| || ||| || ||| || |||| ||||| ||||| | |||||||| || Sbjct 46898 GACGCATGTTGGAC--TTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTT 46955 Query 138981 GTTTAAATT-TCGCACGACCACCTTAGTCGTATGCTTT--AATCGTTCAAAATCGTATGT 139037 ||| | || | ||| || |||| | | ||| | | || | ||| ||||| || Sbjct 46956 GTTCAGGTTCTTGCA-GATGGCCTTGGCA--ACGCTGTGCAGACGCTTAAAGTCGTACGT 47012 Query 139038 GCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCA 139097 ||| ||| || ||| | || || | |||||||| | |||||| Sbjct 47013 C------TTG--GTC-ACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCA 47063 Query 139098 CACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTT 139157 ||| ||||| |||||||| ||||||| |||| || |||| |||||| || ||||| Sbjct 47064 CACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTT 47123 Query 139158 GATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATA 139217 |||||| || | || | || ||||| || ||||| || || ||||| || || | Sbjct 47124 GATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAA 47183 Query 139218 CGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTA- 139276 || |||| || || |||| ||| | ||| | || || ||||| | Sbjct 47184 AGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGT---ACCAG-----AGCTTCTGC 47235 Query 139277 --TTTGACG---CACGTAAAGTT--CGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA- 139328 ||||||| | | | || | ||| |||||| |||||||| || || Sbjct 47236 GCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAAC 47295 Query 139329 TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATAC 139388 |||| |||||||| ||| | ||| | | |||| || || |||||||||||||| | Sbjct 47296 TCGT-CACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTC 47354 Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGC---GAACAGCAA 139445 ||||||| || ||| | | ||||||| ||||| || | ||| | || ||| ||| Sbjct 47355 GCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGC-- 47412 Query 139446 ATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAAC 139505 || ||||| | || ||| || ||| || || ||||| ||||| || Sbjct 47413 -TCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGAC 47471 Query 139506 GTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTG 139562 ||| | |||||||||||| | || || || | || || || ||| ||||| || Sbjct 47472 GTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTG 47531 Query 139563 ATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGT 139622 ||||||| || ||| || ||||| ||||| | ||| ||| | | ||| | |||| Sbjct 47532 GTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT-GCTGA 47590 Query 139623 T-CCGTTGGTGCTACGG--ATGG--GA-CTGTTGCGAGCTCGGACGTCATGTACATTGAT 139676 |||||||||| ||| ||| || | | ||| | |||| | ||| | |||| Sbjct 47591 CACCGTTGGTGC--CGGCAATGTACGAGCCGGTGCCA---CGGATGCAATGGATGTTGAG 47645 Query 139677 GCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATAC 139735 |||||| || ||| | ||||| || | | ||| || | | || ||||| || | Sbjct 47646 GCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTG-AGGGTATCGTAGATGC 47704 Query 139736 CTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCG 139795 | || ||| |||| ||| || || || ||||| ||||| || ||||| | | Sbjct 47705 CGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGG 47764 Query 139796 TGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGT 139855 | ||||| || || ||||| ||||| || || | || |||||| | | || Sbjct 47765 TACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGT 47824 Query 139856 ACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCA 139915 |||| |||||||||||| | || ||| |||||||| ||||||| ||||||||| |||| Sbjct 47825 ACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCA 47884 Query 139916 TATGTTGGATCCGTTCGGCCACCGCGCCCTCGAT 139949 | || ||| || || || ||| ||| | ||| Sbjct 47885 TGTGCTGGGGACGCTCTGCGACCTTGCCGTTGAT 47918 >seq1658 Length=160837 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || || |||||||| || | | Sbjct 96622 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 96681 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || ||||| ||||| Sbjct 96682 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 96741 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || ||||| || ||| | | |||| || || ||| Sbjct 96742 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 96801 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||| |||||||| || || |||||||| | || | || ||||||| Sbjct 96802 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGAGGCG 96850 >seq1857 Length=5366 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || ||||| || || || ||||| || || | | Sbjct 3602 GATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCTTC 3543 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 3542 GGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCA 3483 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || ||||| ||||| | | | || || || || Sbjct 3482 GCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTACAA 3423 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||||||||| | || |||| || || Sbjct 3422 CATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 3375 >seq440 Length=208867 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24727 AACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACA 24786 ||| ||||| || ||||| || || || || || | ||||| | || | || || Sbjct 137906 AACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGC 137847 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||||| || ||||| || || || || ||||| || || || ||||||| ||||| || Sbjct 137846 CAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAA 137787 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||| |||||| | | | | || || || ||||| || ||||||||||| || || Sbjct 137786 GCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCA 137727 Query 24907 CTTGGTGTTGCGATTGCGCGGAGG 24930 | | ||| | || |||| || || Sbjct 137726 CCTTGTGCTCCGTCTGCGTGGTGG 137703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449870791726760