Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4260 190 3e-42 seq3421 183 5e-40 seq330 104 4e-16 seq4481 87.8 3e-11 >seq4260 Length=107242 Score = 190 bits (210), Expect = 3e-42 Identities = 278/393 (71%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| |||||||| |||| ||| |||||||||||||||||||||| ||||||| Sbjct 47529 CTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCT 47588 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||||||||| || | ||| | ||| | | | || | || | | ||| Sbjct 47589 GACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCC 47648 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||| ||||||| ||||||||| | || || | || || || ||||||||||| || Sbjct 47649 GATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTC 47708 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||||||||| |||||||| | || |||||||||||| |||||| ||| || || Sbjct 47709 GATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACC 47768 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| ||||||||||| |||| || || | ||| ||| ||||| | ||| || Sbjct 47769 GGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGT 47828 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 ||| ||| | | | ||| ||| ||| | || ||||| ||||| Sbjct 47829 CTCGATGGCGCTCTCGA---TGTCCTGGCCGTGG--------AT----GCCGACAGCGAC 47873 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGAC 2073932 ||||||| ||||| |||||| ||||| |||| Sbjct 47874 TCGCATGAGCATGTGCTGGGGACGCTCTGCGAC 47906 Score = 134 bits (148), Expect = 2e-25 Identities = 292/441 (66%), Gaps = 4/441 (1%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || |||||| |||| ||||| || | | ||||| ||||||| |||||||| Sbjct 47090 ACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGC 47149 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | | ||||| |||||||||||| ||| ||| | || ||||||||| |||| | | Sbjct 47150 TCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACT 47209 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || |||||| |||| | | |||| || | | | ||| ||| |||| Sbjct 47210 CGAGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCT 47269 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 ||||| ||||| || | |||| ||| ||| ||| || || || Sbjct 47270 CGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACT 47329 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTC-- 2071871 || ||||| | |||||||||||||||| | | || | ||| || || || Sbjct 47330 CGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAG 47389 Query 2071872 GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 2071931 |||| ||| || | || ||||| || ||||| || ||||||||| ||||||||||| Sbjct 47390 GCAC--CCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTT 47447 Query 2071932 TTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 2071991 ||||||||| | || | || ||| | |||||| || || | ||| |||||||| Sbjct 47448 GCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGC 47507 Query 2071992 GCCCTTGCGCTTGCCGCCGCC 2072012 || |||||| ||| || Sbjct 47508 ACCGGGACGCTTGTTGCCACC 47528 >seq3421 Length=130295 Score = 183 bits (202), Expect = 5e-40 Identities = 237/327 (72%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| || ||| ||||||||||| |||||||| Sbjct 34306 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTT 34365 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct 34366 CTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 34425 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 |||| || |||||||| |||||| | | || | | ||||||| | ||||| Sbjct 34426 CGCGACCAGACGCTCGGCGAAAGTGGC---ACGCTTGTCGCTGATCCATCGAAGAGCCCA 34482 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| | | | || || | || |||| |||| ||| || | || || Sbjct 34483 GTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTG 34542 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | || || || ||| ||||||||||| |||||||||||||| ||||||||||| || Sbjct 34543 CTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCCGAGTGGATGTTCTC 34602 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||||||| || || ||||| Sbjct 34603 CATCATGATCTGGAAACCGTAGAAGCA 34629 Score = 111 bits (122), Expect = 2e-18 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 794007 CCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCG 794066 |||||||| | |||| ||| |||||||| | |||||||| ||||||||||| | | Sbjct 34100 CCGAGCGATACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCTG 34159 Query 794067 TTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACG 794126 ||||| ||||||||||| ||||| | || |||| | ||| | |||||||| || ||| Sbjct 34160 TTCATACCGATGAGCGCGACGGGGATTGATTCGCACAGGAACGCCTTCTCGATTTCCACG 34219 Query 794127 GCCTCGATGATGATCT 794142 ||||| ||||||||| Sbjct 34220 GCCTCAGTGATGATCT 34235 Score = 86.0 bits (94), Expect = 1e-10 Identities = 122/171 (71%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 796189 AGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAG 796248 |||||||| ||||| || || || ||||| || || || || ||| ||||||| Sbjct 34673 AGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCACATGCGAGATAAAG 34732 Query 796249 TGACGCTCGTCGTCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACC 796305 || ||||| | |||| | ||| | |||||| | ||| | ||||||| | Sbjct 34733 TGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCTTGGAAAGGTCGATC 34792 Query 796306 TCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||| |||||||| ||||| ||||||||||| |||||||| | ||| ||| Sbjct 34793 TCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAAATC 34843 >seq330 Length=211765 Score = 104 bits (114), Expect = 4e-16 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 429632 CACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGA 429691 ||||||||| |||||||| || ||| |||||||||||||||||||||| ||||| Sbjct 12241 CACCTTCCGTCTCAACCTCAGTGTCACGCCTCCCTACAACGCCGACTTTGACGGTGACGA 12182 Query 429692 GATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGG 429751 ||||||| |||||||||| ||| || | | || ||||| || | || | | | Sbjct 12181 GATGAACTTGCACGTGCCACAGAGTGAAGAGACCCGTGCCGAGCTCTCGCAGATCGCCTG 12122 Query 429752 CGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGATGGA 429811 || | | | || || ||||| ||||||||||||||| |||| || | ||| ||| Sbjct 12121 GGTCCCGCGCCAGATTGTCTCGCCTCAGGCCAACAAGCCCGTCATGGGCATTGTGCAGGA 12062 Query 429812 CGCCCTC 429818 | | ||| Sbjct 12061 CACGCTC 12055 >seq4481 Length=90198 Score = 87.8 bits (96), Expect = 3e-11 Identities = 262/390 (67%), Gaps = 26/390 (7%) Strand=Plus/Plus Query 2019003 GACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGC 2019062 ||||||||| || |||| | | |||| | ||||| | ||||| || ||| Sbjct 19512 GACGGCAACTGTCCGCACCTGCTCATCTCGGGACTTCCCGGGATCGGCAAAACTACG--- 19568 Query 2019063 ATCGCGTGC-CTGGC--GCGCGTGCTCT--TGGGCGCGGCCGCCGACGAGGCCGTGCTCG 2019117 ||| |||| ||| | || ||||| || |||||| || | | |||| ||||||| Sbjct 19569 -TCG-GTGCTCTGTCTTGCTCGTGCGCTGCTGGGCGAAGCATACAAAGAGGGTGTGCTCG 19626 Query 2019118 AACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACG 2019177 ||||||| || || ||||| || || || || || || || | | |||||| ||| Sbjct 19627 AACTCAACGCTTCCGACGAACGAGGTGTCGATGTGGTTCGAAACAAGATCAAG----ACG 19682 Query 2019178 CTT-CG-AAAAGAA----TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATG 2019231 || || ||||||| ||| || || ||||| | || ||| | ||||||||||| | Sbjct 19683 TTTGCGCAAAAGAAAGTGTCG--CTCCCACCCGGAAGGCATAAGATCATCATCCTCGACG 19740 Query 2019232 AGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACA 2019291 |||| || | | || | || || || ||||| || ||| ||||||||| | ||| Sbjct 19741 AGGCGGATAGTATGACTCCTGCTGCGCAACAGGCGCTGCGAAGGACCATGGAGATCTACT 19800 Query 2019292 CCAACACGACGCGGTT-TGCGCTGGCCTGCAA-CACGTCGTCGATGGTCATCGAAGCCCT 2019349 | || || || |||| ||| | || ||||| || | | | |||||||| || | Sbjct 19801 CGAATACTACCAGGTTCTGC-TTCGCTTGCAATCAGAGCAAC-AAAATCATCGAACCCAT 19858 Query 2019350 CCAGAGCCGTTGCGCCATCTTGCGCTTTGC 2019379 |||| || || |||||||| || | ||| Sbjct 19859 CCAGTCGCGCTGTGCCATCTTACGGTATGC 19888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915739312467713