Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq440 84.2 2e-11 >seq440 Length=208867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| ||||| | || || || ||||| || || ||||| || |||| Sbjct 137703 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 137762 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| ||||| || || || || | |||| | ||||| || || ||| Sbjct 137763 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 137822 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | |||||| | || | ||||| || || || Sbjct 137823 ATACCCTCCTTGTCCTG-AATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCAC 137881 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTT 29763 ||||| || || || || || ||| Sbjct 137882 CTCAAGGGTAATGGTCTTACCTGTT 137906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385196819607147