Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4260 489 2e-133 seq3421 168 6e-37 seq1658 123 2e-23 seq1857 113 4e-20 >seq4260 Length=107242 Score = 489 bits (542), Expect = 2e-133 Identities = 1258/1873 (67%), Gaps = 72/1873 (4%) Strand=Plus/Plus Query 147943 CGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGT 148002 ||| ||| || ||||||||||| | ||||||||||| ||| | ||| |||| || Sbjct 46161 CGGCTTG-GTCCGCAGATAGTATGTACCCGTCTTGAGTCCCTTTTTCCAGCCGTAAAAGT 46219 Query 148003 GCACCGACGACATGAGCGTGT----ACGTCGGGTGCGGCACAAACAGA---TTAAACGAC 148055 ||| ||| | ||||| ||| ||||||| ||| | | | || || | |||| Sbjct 46220 GCATCGAGG---TGAGC-TGTCCAAACGTCGG-TGCCGAA--AGGTGAATGTTGAGCGAC 46272 Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCT-T 148114 || |||| || ||||| || ||||| || ||||| || |||| |||| || | | Sbjct 46273 TGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATGTCGATGA-TCGCCTTCTGGCT 46331 Query 148115 CATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTG 148174 ||||||||| |||||||||||||| |||||| | || |||||||| | | ||| Sbjct 46332 GATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCCGGAATGCCTGGCACGTTCTG 46391 Query 148175 CACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTC 148234 | ||| |||| |||||| | || | || ||| ||| | | ||| |||| Sbjct 46392 GATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGTCGTTCCACAGGCCCTGCTC 46451 Query 148235 GATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCG 148294 | ||| || | || || | ||||||||||| ||||| || |||||||| ||||| Sbjct 46452 CACCAGCTCGCGCAACAACCACGGGTTCACCACCTGGAACTCACCCGCGAGCACACGCCG 46511 Query 148295 CAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGG 148353 ||| || | |||| |||| | || || || ||||||| ||||| ||||| | Sbjct 46512 -AGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCG 46570 Query 148354 TCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTT 148413 ||| || || ||||| || | ||||||||||||||| | ||| | || || | Sbjct 46571 TCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCT 46630 Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACT 148473 || ||| || ||||||||||||| || |||||| || || |||||||||||||| Sbjct 46631 TGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGACCCCCCACATGTCGTACT 46690 Query 148474 GCAGAATGCCGCGGCTA-GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCC 148532 ||| | | | | || | ||||| ||| |||||| ||| |||||| | | Sbjct 46691 GCA-ACTCACCCTGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCA 46749 Query 148533 GCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTT 148591 |||| ||||| | |||| || || ||| ||| ||| || ||||| || ||| ||| Sbjct 46750 GCCAACTCGCACGATCGC-TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTT 46808 Query 148592 GAGCAGC---GCC---GCCGACTCGCTTTCGTACGGCATACGC-AGCCGCACAAACGCGT 148644 || || ||| |||||||| ||| ||||| | | || ||||| | Sbjct 46809 CAGTCGCCGAGCCTCGGCCGACTCAA------ACG-CATACCCCATGATCATGAACGCAT 46861 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 | ||||||||||| || || | || || || ||||| |||||||| |||||| Sbjct 46862 CCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGCCT 46921 Query 148705 TCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGC-GCACCACCACCTTT 148763 ||||| |||||||| ||| |||||||||||||| || || ||| | |||| Sbjct 46922 CCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCAG-ATGGCCTTG 46980 Query 148764 GTAATTCTGCGCAGCAATTCAAAATCGTACTT----GTCATCTACG---ATGCATCGGTT 148816 | || ||| |||| | ||| |||||| | |||| || | ||| | | Sbjct 46981 GCAACGCTGTGCAGACGCTTAAAGTCGTACGTCTTGGTCA-CTGGGTCAATGAACGTGGG 47039 Query 148817 CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGAT 148876 || ||||| ||||| || |||||||| ||| ||| || || ||||||||||| | ||| Sbjct 47040 CAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGAT 47099 Query 148877 CTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936 ||||| |||| ||| ||| |||||| ||| | |||||| || |||||||||| ||| Sbjct 47100 CTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 47159 Query 148937 GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAA 148996 | |||||||||||||| ||| | || ||| || || ||| | || | ||| Sbjct 47160 GGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG- 47218 Query 148997 CCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCGTATAA 149053 || ||| | |||||| || ||| ||| |||||||||| |||||| Sbjct 47219 -CGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCG-AGCGACCCTCGGCCTCGTAGCG 47276 Query 149054 AGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGG 149113 || || ||||| ||| | || |||||||| ||| | ||||| ||||||| || || Sbjct 47277 CTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGG 47336 Query 149114 GCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCA 149173 ||||||||||||||| |||||| | | || | |||||| || ||||| |||||||| Sbjct 47337 GCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCA 47396 Query 149174 GAGCGCGTACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGT 149232 ||| || || | ||| || |||| | ||| || || || ||| |||||||| Sbjct 47397 GAGTGCATAGAAGAGCTCACGCG-CACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGT 47455 Query 149233 TGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGC 149292 ||| | || | ||||| |||||| || |||||||| | || | || || | Sbjct 47456 CGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGAC 47515 Query 149293 GC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTT 149349 || ||||| ||||||||||||| |||| | ||||||| || || || | ||| || Sbjct 47516 GCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCA 47575 Query 149350 CAATGCC---ACTGGCAGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCAC 149404 ||||||| ||| || ||||| || | |||| ||| |||| | || | Sbjct 47576 CAATGCCGTTGCTGACA---CCGTTGGTGCCGGCAATGTACGA--GCCGGTGCCACGGAT 47630 Query 149405 TTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AGTCGCCG 149462 || | ||||| ||||||||| || ||||| ||| ||||| || | |||| | Sbjct 47631 GCAATGGATGTTGAGGCCGATGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTC-TTG 47688 Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522 || || ||||||||| ||||| ||| ||||||||| | || |||||||| | Sbjct 47689 AGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAG 47748 Query 149523 ATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTC 149582 | ||||| | || ||||| ||| | || || |||||| ||||| || || Sbjct 47749 AGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTT 47808 Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 || ||| | | ||||| ||||| ||| || ||||| | ||| |||||||| | Sbjct 47809 TGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACA 47868 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAG 149702 ||||| ||||| ||||| ||||| || ||||| || || ||| || |||||| Sbjct 47869 GCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAA 47928 Query 149703 TAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCA 149762 ||| || || |||||| |||| || | ||||||| ||||| || ||| | Sbjct 47929 TAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATG 47988 Query 149763 ATGGCGGCGTCGA 149775 ||||| | ||||| Sbjct 47989 ATGGCCGAGTCGA 48001 >seq3421 Length=130295 Score = 168 bits (186), Expect = 6e-37 Identities = 527/804 (66%), Gaps = 39/804 (5%) Strand=Plus/Plus Query 120369 TTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGG--- 120425 ||||||||| ||||| || ||||| |||| |||||||||| ||||||| || ||||| Sbjct 34015 TTTCTCAAAGAAGTTGGTCTTGCCTTCCAACGAAATGTTGGTCATAAAGTCAAACGGACA 34074 Query 120426 -GTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAA 120484 || | | ||| ||| || | || | | ||| |||| || || || ||| Sbjct 34075 TGTGGAGC-CGT---AGTGCACTGGGTTTCCGAGCGATACCAGCAAGCGATCGGCGACAT 34130 Query 120485 ACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGC-- 120542 |||||||||| | ||||||| || |||||| || | | ||| || || | | Sbjct 34131 ACTCAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCGACGGGGATTGATT 34190 Query 120543 CG-ACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGT 120601 || || ||| | ||||||| || ||||| ||||| ||| || ||||| |||| Sbjct 34191 CGCACAGGAA---CGCCTTCTCGATTTCCACGGCCTCAGTGATGATCTTGAGCACCGTGT 34247 Query 120602 G-----GC-CGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCG 120655 || || || || || | | | || || ||||| |||||||||| Sbjct 34248 CTGGGTGCGCGCGCCTCCTGAGGTGGCTGA---------AGAGAAGGCAGGCAAAGTCCG 34298 Query 120656 TGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGC 120715 |||| || |||||||| ||||| || ||||||||| ||||| || |||||||||| | Sbjct 34299 TGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGAC 34358 Query 120716 CTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGA 120775 | | |||||| |||| || | ||| || |||||| || || | |||||| ||| Sbjct 34359 CGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGG 34418 Query 120776 TGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGG 120835 |||||| ||||||| |||||||| || || || |||| | |||||| | | Sbjct 34419 CGGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAG 34478 Query 120836 CCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCATGTCGC 120895 |||| |||||||| | ||| ||| || ||||| |||| | ||| || | Sbjct 34479 CCCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCAC 34538 Query 120896 GCTCGCCCTCCTC-CGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGTGCACG 120954 ||| | ||| || | | || | ||||||||| ||| | |||| ||| | | Sbjct 34539 GCTGCTCAGGCTCACGGATGTAAGTG-TCGATGAGCAGCGAGTAGGTCTCCGAGTGGATG 34597 Query 120955 CACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTC--CAGCTCGGGCACCGCCC 121012 ||| |||| | || ||| ||| | | ||||| | || | | | || Sbjct 34598 TTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTG---AACTTCC 34654 Query 121013 G--CTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAGAACGC 121070 | ||| | ||| | ||||| || ||||||| || | || ||||||||||| Sbjct 34655 GAACTG-AAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGC 34713 Query 121071 CAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTGTGCGCAAAATCGTCATA 121130 ||||| ||| ||||||||| ||||| | ||| | ||||||| | | |||| Sbjct 34714 AAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGTCGTGGAG 34773 Query 121131 GTCCTTGGACAGGTCGACCTCCTC 121154 ||||||||| ||||||| |||||| Sbjct 34774 GTCCTTGGAAAGGTCGATCTCCTC 34797 >seq1658 Length=160837 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||||||||| || ||||| ||| | ||| || || || ||||||||||| | Sbjct 96590 GTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCG--TCTTCGAGCTGCTTAC 96533 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| |||||||| || ||||| |||||||||||||| |||||| || Sbjct 96532 CAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 96473 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | || ||| || |||| || | ||| ||||| || || | Sbjct 96472 TGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCG 96413 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 96412 TCTTAACAAAAATCTGCAT 96394 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| || || ||| ||| | || |||||||||||||| Sbjct 96818 GTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCA-TCTTCGAGCTGCTTGCC 96760 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||| || ||||| |||||||||||||| |||||| ||| Sbjct 96759 GGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTT 96700 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || |||| |||| ||| ||||| || || || Sbjct 96699 GACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGT 96640 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 96639 CTTGACAAAGATCTGCAT 96622 >seq1857 Length=5366 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || ||||| || | ||| ||| |||||||| Sbjct 3396 AAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGT--ACGTCCGTCCTCGA 3453 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | || || |||||||||||||| || ||||| |||||||| || Sbjct 3454 GCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGA 3513 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | || | ||||| | | |||||| |||| |||| ||| || | Sbjct 3514 TCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTCTTAC 3573 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || || |||||||| Sbjct 3574 CCGTGAGGGTCTTGACAAAGATCTGCAT 3601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483391994163080