Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1857 96.9 2e-15 seq1658 89.7 3e-13 >seq1857 Length=5366 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || ||| | |||||| || || || ||| || || |||||||| || | Sbjct 3373 CACCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 3432 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || ||| |||| || | || || || || || |||| ||||||||| || ||| Sbjct 3433 AAAGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCG 3492 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || || | ||| ||| | |||||| || ||| Sbjct 3493 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCGATGGTGTCCGAAGACTCC 3551 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || ||||| || | || || |||||||||||||| Sbjct 3552 ACCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 3601 >seq1658 Length=160837 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| || || || |||||||| || || || ||||| | || || Sbjct 96830 ACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCG 96771 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || |||||||| || | |||||||||||| | || | ||||| ||||| Sbjct 96770 AGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGG 96711 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | | || | ||| | |||||| || || || || | ||||| || || Sbjct 96710 ATCTT-GGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTT 96652 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| | ||| || ||||||||||||||| Sbjct 96651 GCCTGTGAGCGTCTTGACAAAGATCTGCATA 96621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328684903016640