Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4260 181 1e-40 seq1658 84.2 2e-11 >seq4260 Length=107242 Score = 181 bits (200), Expect = 1e-40 Identities = 983/1544 (64%), Gaps = 53/1544 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAAAGG 146951 || ||||| || ||||| ||||| |||||||| | |||| || | ||| || |||| Sbjct 46477 TTCACCACCTGGAACTCACCCGCGAGCACACGCC-GAGAGTAGATGTTGGACGTATAAGG 46535 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| || |||| ||| ||| | || || ||| | ||||| ||||| |||| Sbjct 46536 CTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAG 46595 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 || || || || || || |||| | ||| ||| |||| | ||||||||| Sbjct 46596 CAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCA 46655 Query 147072 CATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACT 147131 || ||| ||||| || ||||||||||||||| | | | || | ||||| Sbjct 46656 CAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGA 46715 Query 147132 GCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGC 147191 ||| ||| |||| |||||| |||| ||| ||||| || || | ||| || || Sbjct 46716 GCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAACTCGCACGATCGCTCCAGTGC 46775 Query 147192 TCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCTCG 147249 | | ||| ||||| || ||| || ||| || | || || || | ||| Sbjct 46776 GGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGA--GCCTCGGCCGACTCA 46833 Query 147250 TAAGGCATACGC-AGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 || |||||| | | | || || ||||| || | ||||| | ||||| ||||| || Sbjct 46834 -AACGCATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGG 46892 Query 147309 TCGATGC----TTTTCG--TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATC 147362 || || | || | |||| |||| || |||| | ||||||| ||| || Sbjct 46893 ACGGTGACGCATGTTGGACTTGC-GCGCCTC---CTCG--ACCGGATAGTAGTTAATGTC 46946 Query 147363 AATAATCTTGTTGAGGTTAC-GCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAAT 147421 || |||||||| ||||| ||| | | || | | | | || || || | Sbjct 46947 GATGATCTTGTTCAGGTTCTTGCAG-ATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGT 47005 Query 147422 CATAAGTCCCGTCTTCGACACGTACGCATTG-----GTTCACGGCGATAGACGCCAGATT 147476 | || |||||| | ||| || || | || ||||| || || || || Sbjct 47006 CGTA-----CGTCTTGGTCACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTT 47060 Query 147477 GCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCA 147536 ||| || ||| ||| |||| ||||||||| | ||| |||| |||| |||| ||| Sbjct 47061 GCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCA 47120 Query 147537 TTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCAT 147596 || || || | || | ||| ||||| || || ||| ||||| ||| | || || Sbjct 47121 CTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGAT 47180 Query 147597 GTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGC-AGGTCCTGCGCTC 147655 | | || ||| |||||| || | || | ||| | || || | ||||||| Sbjct 47181 GAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG-CGTACCAGAGCTTCTGCGCTT 47239 Query 147656 GCACCCGCTGCCGAT--AGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTC 147713 || | ||| | |||| |||||| ||||| |||||||| | ||||||||||| Sbjct 47240 TGAC--GGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTC 47297 Query 147714 GTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTC 147773 ||| |||||||| ||||| || || || |||| | || ||||| |||||||| | | Sbjct 47298 GTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCC 47357 Query 147774 GTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG 147833 || | | || | ||| || ||||| |||||||| || || || | || || || Sbjct 47358 GTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACG 47417 Query 147834 CGCTTTGCA----ATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGT 147889 ||| ||| |||| || | ||||| || | || | | ||| || Sbjct 47418 CGC-ACGCACCTCCTCCTTTCCGTGGTTCTTGCG---CAGGTCGAGGAACTCAAAGACGT 47473 Query 147890 CGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGT 147946 | | |||||| ||||||||||| | || | ||||| |||| || || ||||||| Sbjct 47474 CCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGT 47533 Query 147947 CGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAG-TG 148005 |||| | |||| | ||||||| || ||||| | |||||| | | |||| | || | Sbjct 47534 CGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCG-TTGCTGACA 47592 Query 148006 CCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATG 148065 ||||||||| || | |||| | | || | || | ||| | ||| ||| Sbjct 47593 CCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGATG 47652 Query 148066 CCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGAT 148124 || || ||||| ||| || || || ||| | || ||||||||||||||| Sbjct 47653 CCACCGGCCGT-CTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGAT 47711 Query 148125 GCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGC 148184 ||| | || | | || | || ||||| | | ||||| | | || || || Sbjct 47712 CGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGC 47771 Query 148185 CGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTC 148244 ||| || || || ||||| ||||| | ||||| ||| | | |||||||| Sbjct 47772 GTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTC 47831 Query 148245 AATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTG 148304 || ||| |||||||| | |||||| ||||| | ||||| ||||||||||||||||| Sbjct 47832 GATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTG 47891 Query 148305 TGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTA 148364 || || || || || | |||||| ||| | ||| | ||||| || ||| | Sbjct 47892 GGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAA 47951 Query 148365 ACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || || | ||||| | || || | ||||| |||||||| Sbjct 47952 GCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATGATGGCCG 47995 >seq1658 Length=160837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||||||||||||| | || || ||||||||||| ||||| | Sbjct 96587 GACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCG 96528 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| ||||| |||||||| || || || || || | Sbjct 96527 AAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 96468 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | ||| ||||||| || | || || || || || || || Sbjct 96467 TTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTA 96408 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 96407 ACAAAAATCTGCAT 96394 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || |||||||||||||| || || || |||||||||||| || |||| | Sbjct 96815 GATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCA 96756 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| |||||||| ||||| ||||| |||||||| || || Sbjct 96755 AAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTC 96715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476582799930120