Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3421 242 5e-58 seq4260 183 4e-40 seq4657 93.3 6e-13 seq330 91.5 2e-12 >seq3421 Length=130295 Score = 242 bits (268), Expect = 5e-58 Identities = 363/509 (71%), Gaps = 10/509 (2%) Strand=Plus/Minus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||| ||| |||||||| || ||||||||||| ||||| |||||||| |||||| ||| Sbjct 34846 GCAGATTTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCG 34788 Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCA 1455888 |||| | ||| | |||||| ||||| |||| | |||||||| || | Sbjct 34787 ACCTTTCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTA 34728 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || ||| || || || || || ||| || ||||| ||||| ||||||||| | Sbjct 34727 TCTCGCATGTGCTTGCGTTCTT-CGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTT 34669 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | || || || | ||||| |||| || ||||| ||||||||| Sbjct 34668 GAGCGTTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATC 34609 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || ||||||||||| || |||||||| ||| || || Sbjct 34608 ATGATGGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAG 34549 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 || | || || | || ||| |||| |||| || | ||| || | | | ||| Sbjct 34548 CCTGAGCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAG 34489 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTC 1456187 ||||||||||| | ||||||| | | || | | |||||| |||||||| || Sbjct 34488 GCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGT---GCCACTTTCGCCGAGCGTCTG 34432 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 |||| |||||||| |||||||||||||||||||||||| ||| | | ||||| ||| Sbjct 34431 GTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGG 34372 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||| |||||||||||||| Sbjct 34371 CTCAAGAAGCGCGGTCTCATGCCCGGTCT 34343 Score = 98.7 bits (108), Expect = 1e-14 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| |||||||| || |||||||| | ||| | |||| || | || || | Sbjct 34235 AGATCATCACTGAGGCCGTGGAAATCGAGAAGGCGTTCCTGTGCGAATCAATCCCCGTCG 34176 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 |||||||||| |||||| || |||||||||||| ||||||| | | ||||||||| || Sbjct 34175 CGCTCATCGGTATGAACAGCA-AGCTCATGTGCCAATACATTG-AGTATGTCGCCGATCG 34118 Query 1456641 CCTGCTCGCGGCGCTCGG 1456658 | |||| | ||||||| Sbjct 34117 CTTGCTGGTATCGCTCGG 34100 >seq4260 Length=107242 Score = 183 bits (202), Expect = 4e-40 Identities = 218/292 (75%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 |||||||| ||| || ||| || |||| |||||||| || ||||| || |||| | Sbjct 47816 ATGTCGCAAAAGTACTTTACCCACGCCTCGCCTACGCTCTTCAACGCCGGTACCCCGCAC 47757 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 |||||| ||||||||||| || | |||||||| || |||||||| |||||||| Sbjct 47756 CCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGACTCGATCGACGGCATCTAC 47697 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 || || |||||| || || | ||||||||| ||||||| |||||||| | | || Sbjct 47696 GATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGGTGGCATCGGCCT--CAACA 47639 Query 260075 CACAAGG--TGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACG--GCCAGTCCAACGG 260130 || | | || | | | ||| | ||| | || |||||||||| | ||| |||||| Sbjct 47638 TCCATTGCATCCGTGGCACCGGCTCGTACATTGCCGGCACCAACGGTGTCAG--CAACGG 47581 Query 260131 CCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | ||||||||||||| ||||| || ||| |||| |||||||||||||||||| Sbjct 47580 CATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCTACGTCGACCAG 47529 Score = 89.7 bits (98), Expect = 7e-12 Identities = 144/203 (71%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| | | || | |||||| |||| || | ||| | |||| Sbjct 47230 AGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACCCTTTCATCCTGTACA 47171 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAAC 262210 ||||||||| ||||| | ||||||||| ||||||| ||||| | | || | ||||| Sbjct 47170 AGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGATCA-AGTGCTCCAAC 47112 Query 262211 CTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT---C 262267 |||| ||||||||| || ||| | ||| ||||| ||||||||||| | Sbjct 47111 TTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAGTGTGCAACCTCGCC 47052 Query 262268 TCGAGCGTGGCCCTGCCCAAGTT 262290 |||| | || ||||||| ||| Sbjct 47051 TCGA---TCGCACTGCCCACGTT 47032 >seq4657 Length=220236 Score = 93.3 bits (102), Expect = 6e-13 Identities = 170/246 (69%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||| |||||||||||||| ||||| || | | ||| Sbjct 30006 TACTCGACCTACATCTACCGTGTGCTCAAGCAGGTTCACCCTGACACTGGT-----ATC- 30059 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | || | |||||||| ||| | ||||| | || ||||||| Sbjct 30060 TCGAACAAGGCCATGGCCATTCTTAACTCGTTCGTCCAGGACATCTTTGAGCGCATCGCA 30119 Query 725019 ACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 || ||||| |||| || || | ||||||| || ||| |||| |||| Sbjct 30120 ACTGAGGC--GTCGAAGCTCGCTTCGTACAACAAGAAGTCGACCATCTCGTCGCGAGAGA 30177 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||||||| || || ||||| || | | ||| || || ||| ||||||| |||| || | Sbjct 30178 TCCAGACGGCTGTCCGCCTCATTCTTCCCGGTGAGCTTTCCAAGCACGCCATCTCGGAAG 30237 Query 725137 GCACCA 725142 | |||| Sbjct 30238 GTACCA 30243 >seq330 Length=211765 Score = 91.5 bits (100), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 1817472 ACCGACGAGGGCGTCCATGACCAGGCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGT 1817531 |||| ||| | |||| || | ||| |||| ||||||||||||||| ||||| || | Sbjct 12049 ACCGCAGAGCGTGTCCTGCACAATGCCCATGACGGGCTTGTTGGCCTGAGGCGAGACAAT 12108 Query 1817532 CTTGAGGGCCACGTTCATGGTGTGCGTCACCTCGGCGCGCGCGTCT-CAGACTGGGGCAC 1817590 || | | | || | | |||| | |||||| || | ||| || ||| ||||| Sbjct 12109 CTGGCGCGGGACCCAGGCGATCTGCGAGAGCTCGGCACGGGTCTCTTCACTCTGTGGCAC 12168 Query 1817591 ATGGAGGTTCATCTCGTCGCCGTCAAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTT 1817650 || | |||||||||||| |||||||||||||| ||||||| |||||| ||||| Sbjct 12169 GTGCAAGTTCATCTCGTCACCGTCAAAGTCGGCGTTGTAGGGAGGCGTGACACTGAGGTT 12228 Query 1817651 GA 1817652 || Sbjct 12229 GA 12230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177351414088254