Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4260 233 2e-56 seq3421 102 1e-16 >seq4260 Length=107242 Score = 233 bits (258), Expect = 2e-56 Identities = 900/1395 (65%), Gaps = 33/1395 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | || || || || ||||| || ||| |||| ||| || || || Sbjct 46515 GTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGA 46574 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| || || ||| ||||| || | || ||| | Sbjct 46575 AGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGC 46634 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTT-GGTTTCACCTTCCCACATGTCAAACTGAA 110885 |||||| | ||||||| | | | || | ||| |||||||||| |||| | Sbjct 46635 CTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGACCC-CCCACATGTCGTACTGCA 46693 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || || || ||||| || || | | || || ||| || || ||||||| Sbjct 46694 ACTCACCCTGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCA 46753 Query 110946 ATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA-T 111003 | || || | |||| ||||| | ||||| || ||||| |||||||| | | |||| | Sbjct 46754 ACTCGCACGATCGC-TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGT 46812 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 | || | || | | || ||||| || || | | || || ||||||| || || Sbjct 46813 CGCCGAGCCT-CGGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCC 46871 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123 |||||||| | || || || | ||| ||||| || ||||| ||||| ||| || || Sbjct 46872 CTGAACACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGG 46931 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 ||| | || |||| |||| ||| || || ||| | ||| | | || Sbjct 46932 ATAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTG 46991 Query 111184 AAGTTTTTCATAATCAAAAGTGCGAGTCTCT---TCATTGACATACTTTGGAAGGGCGAT 111240 || | | | || | || ||| || ||| ||| || | || || ||||| Sbjct 46992 CAGACGCTTAAAGTCGTACGTCTTGGTCACTGGGTCAATGA---ACGTGGGCAGTGCGAT 47048 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || || | ||||| || ||| ||| || | | ||||||| | || || ||||| Sbjct 47049 CGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACA 47108 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 |||||||| | ||| ||||| || | ||||| ||||| ||||| |||| || || Sbjct 47109 CAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTC 47168 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA- 111419 |||||| || ||| | || | |||||||| |||||||| | ||| || || | ||| | Sbjct 47169 CTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAG 47228 Query 111420 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 | || ||| | | || || || | || ||||| |||||||| ||||||| Sbjct 47229 CTTCTGCGCTTTG-ACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGC 47287 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 |||||||| ||||| ||||| ||||| || || || || || | || | Sbjct 47288 GCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCG 47347 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| | || | ||| |||| ||||||||| || || || | ||| || | | | Sbjct 47348 ACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGA 47407 Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 |||| || | || |||| || | || ||||| || | || |||||||| | Sbjct 47408 AGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAA 47467 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 111713 || |||| ||||||||| |||| || | || | | || ||||| | Sbjct 47468 AGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGG---GACGCTTGTTGC 47524 Query 111714 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 111773 || | || | || |||||||| ||| ||| || ||||| ||||| || | ||| || | Sbjct 47525 CACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGT 47584 Query 111774 --CTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATG 111829 |||| ||| || || || ||| ||||| || | | | ||||||| Sbjct 47585 TGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCCGG--TGCCACGGATGCAATGGATG 47640 Query 111830 TGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 111889 | | || || || || ||| ||| ||||| ||||| | | || || | ||| Sbjct 47641 TTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAG 47700 Query 111890 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 111949 || |||| ||| ||||| ||||| ||| | ||||||||| || | |||||| Sbjct 47701 ATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGC 47760 Query 111950 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GACATCTT 112008 || ||||| || |||||||| || || | ||||| | || ||| || | ||||| Sbjct 47761 GGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAG-TACTTTTGCGACATAAG 47819 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 || ||| ||||| | | | || ||||| | ||||||||||||| ||||| ||||| Sbjct 47820 GTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCAT 47879 Query 112069 GAACATGTACTGTGG 112083 || ||||| ||| || Sbjct 47880 GAGCATGTGCTGGGG 47894 >seq3421 Length=130295 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| |||||||| || || || || || || || ||||| ||||| Sbjct 34288 GGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACC 34347 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | |||||| || ||||| ||||| Sbjct 34348 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGAT 34407 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 ||||| || |||||||| | || || |||||||| Sbjct 34408 GCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAA 34446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627994577143200