Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3200 275 2e-68 seq1658 165 2e-35 seq440 107 6e-18 seq3309 93.3 1e-13 >seq3200 Length=132528 Score = 275 bits (304), Expect = 2e-68 Identities = 886/1360 (65%), Gaps = 25/1360 (2%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | |||||||| || || ||||| || || ||||||||||| ||| Sbjct 99514 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 99573 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || | ||||| || || || |||||| | || || || ||||| || || || ||| Sbjct 99574 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATATGTCGCCTTCACC 99633 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| | ||||| ||| | || || || || | || || || | || Sbjct 99634 GACTCGGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCACAAC 99693 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 || || || || || ||||| | || || | ||||| ||| | || || Sbjct 99694 ACCGTCTTCGACGCCAAGCGTTTGATCGGCCGCAAGTTC----GACGACGCTGAGGTCCA 99749 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 ||||| | || || | ||||| | ||| | | ||||| || || || Sbjct 99750 GTCTGACATGAAGCACTGGCCTTTC---GAGGTTACCTCGGTCGGTGGCAAGCCCCAGAT 99806 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTA-CCCGAAGAAATTTCATCAATGG 349553 | ||||||| || ||||| || || | ||| |||||||| || ||||| |||| Sbjct 99807 TCGCATTGAATACAAGGGTGAG-AAGAAGACTTTCACTCCCGAAGAGATCTCATCCATGG 99865 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 || | | || ||| || | ||| || || || | |||| || || | ||||||| Sbjct 99866 TTCTCCTCAAGATGCGCGAGACTGCCGAGGCTTACCTCGGTGGTACCGTCAAGGATGCTG 99925 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 | | ||||| || || || || || || | ||||| || || || |||||||| | Sbjct 99926 TCGTCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACCAAGGATGCTGGTA 99985 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 |||| |||| | || || | | || || || || ||||||||||| || || || | Sbjct 99986 TCATTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTT 100045 Query 349734 ATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 | || || || || | || || || || ||| |||| ||||| ||| | ||||| | Sbjct 100046 ACGGTCTCGACAAGAAGACCGAGGGTGAGAAGAATGTTCTCATTTTCGATCTCGGTGGAG 100105 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 |||| || |||||||| || || || |||| ||||| || || || || || || || | Sbjct 100106 GTACCTTCGATGTATCGCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGGCCACCG 100165 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 ||||||| || ||||||||||| || || ||||| || |||||||| || ||||| Sbjct 100166 CTGGTGACACCCATCTTGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTTGTCC 100225 Query 349914 AAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGA-TAATCCTAGAGCAATGCGTCGC 349972 | || || ||||| |||| || | ||| | || || | || | ||||| Sbjct 100226 AGGAGTTCAAGCG-CAAGAACAAGAAGGACTTGACCACCAACGCTCGTGCCCTTCGTCGT 100284 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || | ||||| ||||| ||||| |||||| | | || || || | || || | || Sbjct 100285 CTTCGCACTGCTTGTGAGCGTGCCAAGCGTACTCTCTCGTCGGCTGCTCAGACGACCATC 100344 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || || || ||| || | || |||| | || || || ||||| || || Sbjct 100345 GAGATCGACTCGCTCTTTGAGGGTATCGACTTCTACACCTCGATCACCCGTGCCCGTTTC 100404 Query 350093 GAAGAATTATGTATGGATCT-TTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAA 350151 || || | ||| || || || | | | || || || ||||| || || || | Sbjct 100405 GAGGAGCTCTGTGGTGACCTCTTCTCGCAC-ACCATTGAGCCTGTCGAGAAGGTTCTCCG 100463 Query 350152 AGA-TGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210 || | ||| | || | | || | || | || | || | || ||||||||||| | Sbjct 100464 CGACTCCAAGATTGACAAGGGCTCTG-TTCACGAGATCGTCCTTGTCGGTGGTTCTACTC 100522 Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGAT 350270 |||| || || || || || | || | || || || || || || | | | | Sbjct 100523 GTATCCCCAAGGTGCAGAAGCTGCTCACCGACTTCTTCAACGGTCGTGAGCTTAACAAGT 100582 Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTG 350330 | || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | || | Sbjct 100583 CGATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGCCATTCTTTCGG 100642 Query 350331 GAAATAAGAGTTC---TAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGC 350387 | | | | ||| || | | | || || | || || ||||| |||| || ||| Sbjct 100643 G---TGACACTTCAGAGAAGACTCAGGACCTGCTCCTTCTCGATGTTGCTCCTCTCTCGA 100699 Query 350388 TTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTAC 350447 | || | || || | |||| || | || ||| || || || | ||||| | Sbjct 100700 TGGGTATCGAGACCGCCGGTGGTGTCTTCACACCTCTCATCAAGAGGAACACCACTGTGC 100759 Query 350448 CTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTC 350507 | || || ||||| | | || || || | ||| || || ||||| | ||| || | Sbjct 100760 CCACCAAGAAGTCGGAGATCTTCTCGACTTATGCCGACAACCAGCCCGGTGTATTGATCC 100819 Query 350508 AAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAA 350547 | || || || || || ||||| ||||| ||||| || || Sbjct 100820 AGGTGTTCGAGGGCGAGCGTGCCCGCACCAAAGACAACAA 100859 >seq1658 Length=160837 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | || | ||||| ||||| || |||||||| ||||| || || || Sbjct 96624 CATACCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTC 96565 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| || || || ||||| ||||| ||||| ||||||||||| Sbjct 96564 GGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGG 96505 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || || || || || || || | || || | || Sbjct 96504 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTC 96445 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| ||||| || || || || || |||||||||||||| Sbjct 96444 GACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 96394 Score = 134 bits (148), Expect = 4e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| |||||||| || || || ||||| || || || || | || || ||||||| Sbjct 96831 GACCAAG-TGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTT 96773 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || || || |||||||| ||||| ||||||||||||||||| ||||| || || | Sbjct 96772 CGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTT 96713 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || || || || || || | || || | || ||||| || || | |||| Sbjct 96712 GGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCT 96653 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||| |||||||| Sbjct 96652 TGCCTGTGAGCGTCTTGACAAAGATCTGCAT 96622 >seq440 Length=208867 Score = 107 bits (118), Expect = 6e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| || || || || || || || || || || || Sbjct 137700 ATACCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCC 137759 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| || || || || || || ||||| || || ||||| || || Sbjct 137760 GAGAGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGG 137819 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || |||||||| || || || ||||| || || | || || | || Sbjct 137820 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCC 137879 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || ||||| |||| ||||| || ||| |||| Sbjct 137880 ACCTCAAGGGTAATGGTCTTACCTGTTGGTGT 137911 >seq3309 Length=355646 Score = 93.3 bits (102), Expect = 1e-13 Identities = 226/341 (66%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || ||||| || | |||||| || || | || | | || || | || ||| | || Sbjct 222116 AAGATGAAAGAGACTGCTGAGGCTTACCTCGGCCACAAGGTCACCCACGCCGTTGTCACC 222175 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || |||||||| || || || ||||| || || || |||||||||| ||| || Sbjct 222176 GTTCCCGCCTATTTCAACGACGCTCAGCGACAGGCCACTAAGGATGCTGGCACCATCGCT 222235 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || || |||| | || || || || ||||| || || || || || || Sbjct 222236 GGTCTTAACGTGCTGCGAATCGTCAACGAGCCTACCGCTGCTGCCATCGCTTACGGTCTC 222295 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | | ||| ||| | || || ||| ||| | || ||||||||||| Sbjct 222296 GACAAGAAG---GACGGTGAATCGCAGATCATTGTTTACGATCTTGGCGGTGGTACTTTC 222352 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 || || || || || | |||| ||| | || || ||| || ||||| || || Sbjct 222353 GACGTGTCGCTCCTCTCGATTGACTCGGGCGTCTTCGAGGTTCTTGCCACTGCCGGCGAC 222412 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTC 349902 || || |||||||| || || ||||| || || |||||| Sbjct 222413 ACTCACCTTGGTGGTGAGGACTTTGACAACCG---CGTTTC 222450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515161852522901