Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4260 338 7e-88 seq772 93.3 5e-14 >seq4260 Length=107242 Score = 338 bits (374), Expect = 7e-88 Identities = 547/779 (70%), Gaps = 6/779 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || |||||||| | ||| | | | | | ||||||||| Sbjct 47881 TCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGAGCGCCATCGAGACGTACA 47822 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| |||||||||||||| |||||| |||| || || |||||||| ||||| Sbjct 47821 ACCTTATGTCGCAAAAGTACTTTACCCACGCCTCGCCTACGCTCTTCAACGCCGGTACCC 47762 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||| ||| | ||| |||||||| || | ||||||||||||||||||||||||| Sbjct 47761 CGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGACTCGATCGACGGCA 47702 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| |||||| ||||||||| | | ||||| ||||| || Sbjct 47701 TCTACGATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGGTGGCATCGGCCTCA 47642 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | | |||||| | |||| | || || || ||||| ||| | | | Sbjct 47641 ACATCCATTGCATCCGTGGCACCGGCTCGTACATTGCCGGCACCAACGGTGTCAGCAACG 47582 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || ||||| ||||||||||||||||||||||| || || |||||| |||||||||| Sbjct 47581 GCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCTACGTCGACCAGGGTGGCA 47522 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || || || ||| | || || |||||| | ||| | | |||| Sbjct 47521 ACAAGCGTCCCGGTGCCTTTGCTATTTACATTGAACCATGGCACTCGGACGTCTTTGAGT 47462 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACA 53671 | ||||| ||||| ||| || || | || ||| |||| ||| ||||| || || Sbjct 47461 TCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGCG-TGCGCGTGAGCTCTTCTAT 47403 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || || ||| | || || ||||||||| | | ||| ||| || ||| || |||| || Sbjct 47402 GCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAGCAGAACGGCGACTGGTCGCTC 47343 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| ||||||||||| || || | | || ||||||||| |||||| | | Sbjct 47342 ATGTGCCCCAACGAGTGCCCTGGTCTGGCCGACTG-CTACGGTGACGAGTTTGAGCGCCT 47284 Query 53791 GTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 || || || |||| | |||| |||| ||| | ||||| |||| || | | Sbjct 47283 CTA-CGAGCGCTACGAGGCCGAGGGTCGCTCGAAGCGCACCGTCAAAGCGCAGAAGCTCT 47225 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || |||||| || ||| |||||||| | || | ||| |||||||| Sbjct 47224 GGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACCCTTTCATCCTGTACAAGGACG 47165 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATGT 53968 | | |||| |||||||||||||||||| ||||| ||||| | |||||| ||| Sbjct 47164 CCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGATCAAGTGCTCCAACTTGTGT 47106 Score = 174 bits (192), Expect = 2e-38 Identities = 536/811 (66%), Gaps = 36/811 (4%) Strand=Plus/Minus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAA 55197 |||||||||| | ||||||||| || ||||| ||| || | ||||||||||||||| Sbjct 46965 GAACCTGAACAAGATCATCGACATTAACTACTATCCGGTCGAGGAGGCGCGCAAGTCCAA 46906 Query 55198 CCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT 55257 | | || ||||| || |||| |||||||| |||||| | || || |||||||| | Sbjct 46905 CATGCGTCACCGTCCGATCGGGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATGATCAT 46846 Query 55258 CGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCA 55316 || | | || || |||| ||||| | | ||| | | ||||| || | || Sbjct 46845 GGGGTATGCGTTTGAGTCGGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGAGAC-CA 46787 Query 55317 TCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATG-AGCGAGGGGACCTACGAG 55375 ||||| || || || ||| ||||| | ||||| | ||| | || | ||||||| Sbjct 46786 TCTACCACGCCGCACTGGAGCGATCGTGCGAGTTGGCTGAGCAGC-ACGGCAGCTACGAG 46728 Query 55376 ACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGG---CAAG 55432 |||| | | ||||| ||| |||| | |||| ||| | ||||| || | Sbjct 46727 ACGTACGCCGGCTCGCCCGCTTCGCAGGGTGAGTTGCAGTACGACATGTGGGGGGTCACG 46668 Query 55433 ---TCTGACCCCATGTTTGACAAGTTGAAGC---ATGACAT--TCACTT-GTGGGGCCTA 55483 || |||| ||| ||| | | ||| | | || || | | || || Sbjct 46667 CCGTCGGACC---TGTGGGACTGGGCGGAGCTCAAGGCCAAGATCGCCAAGCACGGGCTT 46611 Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| |||| || ||||| ||||| |||||| ||||||| ||||| Sbjct 46610 CGCAACTCGCTGCTGCTGGCACCGATGCCGACCGCTTCGACGAGTCAGATCCTGGGCTTT 46551 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| || ||| ||||||||||| || || || || |||||| Sbjct 46550 AACGAGTGCTTCGAGCCTTATACGTCCAACATCTACTCTCGGCGTGTGCTCGCGGGTGAG 46491 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || | ||| | | | || ||| | || | ||||||| Sbjct 46490 TTCCAGGTGGTGAACCCGTGGTTGTTGCGCGAGCTGGTGGAGCAGGGCCTGTGGAACGAC 46431 Query 55664 CAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG-AG--ATT 55717 ||| |||| || || || | || |||| || || ||||||| || || ||| Sbjct 46430 ACGATGAAGAACCGTATCATCGCGC---ACGGCGGATCGATCCAGAACGTGCCAGGCATT 46374 Query 55718 CCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777 || || ||||| || | ||| |||||| |||||||| |||||| | || Sbjct 46373 CCGGACCGCATCAAGAAGCTGTACAAGACGGTCTGGGAGATCAGCCAGAAGGCGATCATC 46314 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT----CTT 55833 |||||| ||| || || || |||| ||| |||||| ||||| || ||||| ||| Sbjct 46313 GACATGGCTGCGGACCGAGGAGCGTTTATCTGCCAGTCGCAGTCGCTCAACATTCACCTT 46254 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 | | | || ||| || | | | |||||||||||||||||| ||||| ||||| Sbjct 46253 TCGGCACCGACGTT---TGGACA-GCTCACCTCGATGCACTTTTACGGCTGGAAAAAGGG 46198 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||||||||||| ||||||||||||||| Sbjct 46197 ACTCAAGACGGGTACATACTATCTGCGGACC 46167 >seq772 Length=205052 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/107 (80%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGC--GCTGCTCCTCGTCG 119140 |||||| |||||||||||||| ||||| || |||||||| || ||| || | |||| Sbjct 176764 GTTGGCGAGCTTGGCACCGTAACCGTTACGGCCACCGGTGACTTTAGCT--TCATTGTCG 176707 Query 119141 TTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 | ||||||||| ||| | ||||| |||||||||||||||||||| Sbjct 176706 TCGTAGTTGGACGAGGTGAGGAGGTGACCAAAGATGAGCTCGGGGAT 176660 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/277 (69%), Gaps = 22/277 (8%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGA---GAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAA 117360 ||||| ||||||||| ||| ||||||||||| || ||| |||| ||| |||||||| Sbjct 178689 GTGAAGATGTAACGACCCGAG---GCAGCATCCTTACCTCCAAGCAA-ACGAGTACCGAA 178634 Query 117361 TTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTT 117420 ||| || || || || | ||||| | ||||||| |||||||||||| || || | Sbjct 178633 TTGGCCCCTGGGTTCAAGCAGGTTGACGTTGTTGCTGCCCACAAAGTTCTGCGCGAGACC 178574 Query 117421 GACAATCGTACCTTGGAGGCTC-GCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGT 117479 |||||||| | | | || | || ||||| ||||| || || | || || ||||| Sbjct 178573 TACAATCGT-CATGCTAAGCGCTGCTTCACCGTGGTGGTAGGCGGCTTGACCCAACACGT 178515 Query 117480 AGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGG-CA-----GG 117533 || | ||| ||||||| || || ||| ||||| || || | Sbjct 178514 TACCGACGAGCGTGTTGACCTTCAACTCGGA------GTTGCTCTTGCGGTCAAACATGA 178461 Query 117534 CATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 |||| || ||||| ||||||| ||||| |||||||| Sbjct 178460 CATACATGACCTTTCGCTGACCAGGCTTGAGACCATC 178424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547183392766600