Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4260 293 3e-74 seq1658 176 5e-39 seq1857 170 2e-37 seq440 154 2e-32 seq3421 105 8e-18 >seq4260 Length=107242 Score = 293 bits (324), Expect = 3e-74 Identities = 1141/1756 (65%), Gaps = 73/1756 (4%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 |||||||||||||| | ||||||||||| ||||| ||||||||||| | |||||| || Sbjct 46168 GTCCGCAGATAGTATGTACCCGTCTTGAGTCCCTTTTTCCAGCCGTAAAAGTGCATCGAG 46227 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 |||||| ||| || || | | | ||||| || ||||| ||||| ||||| Sbjct 46228 GTGAGCTGTCCAAACGTCGGTGCCGAAAGGTGAATGTTGAGCGACTGCGACTGGCAGATA 46287 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || || || || || || ||||| || || || | ||| || || ||||| || || Sbjct 46288 AACGCTCCTCGGTCCGCAGCCATGTCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTC 46347 Query 80218 CGATACACCTTAC-GAAGCTCCTCTGGAATGTC---CAGATTTTGCACACTGCCACCGTC 80273 |||| ||| || || || |||||| | || || || | || |||| Sbjct 46348 TTGTACAGCTTCTTGATGCGG-TCCGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTG 46406 Query 80274 CTTTACAATTTGATTTTTCAATTCAGACGT-CCAGACACCAAGCTTGTGCAGATCTTTCA 80332 | | || | || |||| | | ||| ||| | || ||| ||| || || Sbjct 46407 CGCGATGATACGGTTCTTCA-TCGTGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCA 46465 Query 80333 CAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGTTT 80391 | | ||| | || ||||| |||||||| || || ||| || | ||| Sbjct 46466 ACAACCACGGGTTCACCACCTGGAACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTG 46524 Query 80392 GTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGC 80451 | || |||||||| || |||||| || ||||||||| ||| || |||||| Sbjct 46525 GACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGC 46584 Query 80452 ATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATAT---CCTCGCGCAAA 80508 ||||| | | || ||| || || || || |||||||| ||| | ||| | || Sbjct 46585 ATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGC--- 46641 Query 80509 TCTGACCAAAAAT-CAACCCCAACGCTGTGACCCC--ACATGTCGTGCTGCAAGATGCCC 80565 || | ||| || || ||| |||||||| ||||||||| |||||| ||| Sbjct 46642 TCCGCCCAGTCCCACAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCC 46701 Query 80566 TCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC 80625 | ||| || || || || ||| |||||||||| ||| | | || |||| ||| ||| Sbjct 46702 TGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAACTCGCAC 46761 Query 80626 GA---CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC 80682 || ||||| | || ||||| || ||| |||||||| | ||||| | || Sbjct 46762 GATCGCTCCA---GTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGA 46818 Query 80683 GCCTGTGGGTCG--TCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAA 80740 |||| || || || |||| | ||||| ||||||||| | || || |||||||||| Sbjct 46819 GCCTC--GGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAA 46876 Query 80741 CGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAA 80799 | ||||| ||||||| ||||| ||| |||| || | || | |||||| | || || Sbjct 46877 CACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGC-GCCTCCTCGACCGGATAG 46935 Query 80800 AAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA-ACAACCCGTGTAACATCATGAAG 80858 ||||| | ||||||| ||||||||| | || | | || | ||| || || Sbjct 46936 TAGTTAATGTCGATGATCTTGTTCAGGTT-CTTGCAGATGGCCTTGGCAACGCTGTGCAG 46994 Query 80859 TTTCTGAAAGTCGAA----TTGGTTCCCCT---TC-ACAAATGCCGGAAGGCTCAGGGAC 80910 || ||||||| | ||||| | || || | || | || || | || Sbjct 46995 ACGCTTAAAGTCGTACGTCTTGGT--CACTGGGTCAATGAACGTGGGCAGTGCGATCGAG 47052 Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAA 80970 || || |||||||| |||||||| || | | | | |||||| ||| || || ||||| Sbjct 47053 GCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAG 47112 Query 80971 TTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTG 81030 || || |||| || || || ||||| |||||||| |||| |||| ||||||||| Sbjct 47113 TTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTG 47172 Query 81031 TAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCG 81090 || ||| | ||| | || |||||| |||||||| ||||||||||| ||| | || Sbjct 47173 TACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTC 47232 Query 81091 CGCGCCTTGAC----CACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTT 81145 |||| ||||| | | | | | | || |||||| | || |||| || Sbjct 47233 TGCGCTTTGACGGTGCGCTTCGAGCGA----CCCTCGGCCTCGTAGCGCTCGTAGAGGCG 47288 Query 81146 CGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 | || |||| | |||||| | || || | || | ||||||||||| |||||||| || Sbjct 47289 C-TCAAACTCGTCACCGTAGCAG-TCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGC 47346 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 ||||||| || | ||| || ||||||||| ||||| | |||||| || | Sbjct 47347 GACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAG 47406 Query 81265 AACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323 || || || || ||| ||| ||||||| | || ||||| ||||| ||||| || || Sbjct 47407 AAGAGCTCACGCGCA-CGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 47465 Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------ 81377 | || ||||| |||||||| || | || | || | | || | |||| Sbjct 47466 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACC---GGGACGCTTGTT 47522 Query 81378 GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACC 81437 ||||||||||| |||||| || ||||| ||| || || || | ||| || | || || Sbjct 47523 GCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCC 47582 Query 81438 AT--CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGA 81493 | ||||| |||||| || || | || ||| || || | || | | || || Sbjct 47583 GTTGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATG--GA 47638 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 | || ||||||||||| | | ||| || ||| ||||| || | ||| || | Sbjct 47639 TGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGT 47698 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613 | || || ||||| || | |||||| || | ||| || || | ||| ||| Sbjct 47699 AGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGT 47758 Query 81614 TTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCA 81673 | ||||| ||||| || || || | ||||| | || || | ||||| | Sbjct 47759 GCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAA 47818 Query 81674 GGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCA 81733 ||| || || || || ||| || || | ||||| || |||| ||| || |||| Sbjct 47819 GGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCA 47878 Query 81734 TAAACATGTACTGGGG 81749 | | ||||| |||||| Sbjct 47879 TGAGCATGTGCTGGGG 47894 >seq1658 Length=160837 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| || ||||| || || ||||| Sbjct 96622 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 96681 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || |||||||| || |||||||| || ||| Sbjct 96682 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 96741 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| ||||| |||| ||| || || | ||||| || Sbjct 96742 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 96801 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||||||||| | ||| | |||||||| || || Sbjct 96802 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGAGG 96848 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||||| || |||||||| |||||||| || || ||||| Sbjct 96394 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 96453 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||| || |||||||| || ||| Sbjct 96454 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 96513 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| ||||| || | || || || | ||||| || Sbjct 96514 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 96573 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || ||||| || || ||||| || |||||||| Sbjct 96574 ATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCGACTCCGCGGTGG 96620 >seq1857 Length=5366 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || ||||| ||||| ||||| Sbjct 3601 ATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCTTCG 3542 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| ||||| || |||||| Sbjct 3541 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 3482 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| |||||||| | ||||| || | ||||| || Sbjct 3481 CAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTACAAC 3422 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 3421 ATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 3375 >seq440 Length=208867 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| ||||| |||||||| ||||| || | ||| | ||| | ||||| Sbjct 137905 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 137846 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| || ||||||||||| || || || || |||||| Sbjct 137845 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 137786 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || ||||| | ||||| || |||| |||||||| || || || Sbjct 137785 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 137726 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | ||||| || ||||| Sbjct 137725 CTTGTGCTCCGTCTGCGTGGTGG 137703 >seq3421 Length=130295 Score = 105 bits (116), Expect = 8e-18 Identities = 130/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||||| | || |||||| || || || || || || || || |||||| || | Sbjct 34439 AGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGA 34380 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || ||||| || || ||||| ||||| |||| || |||||||| |||| Sbjct 34379 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCT 34320 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCA 64888 | || |||||||| || ||| || ||||| | || || ||||||||||||| Sbjct 34319 CGCGTGACGAGGGTCTTCACACGGACTTTGCC--TGCCTTCTCTTCAGCCACCTCA 34266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570276416629040