Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4260 107 3e-18 >seq4260 Length=107242 Score = 107 bits (118), Expect = 3e-18 Identities = 449/703 (64%), Gaps = 12/703 (2%) Strand=Plus/Plus Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 ||| |||||| || || || || ||||| | ||||| || || | | || |||| | Sbjct 47315 CCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCT 47374 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 |||| ||||||||||| | ||| || ||| || || || || | | || || | Sbjct 47375 TCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCT 47434 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 |||| ||||| || || |||||||| | | || || ||||||||||| | | Sbjct 47435 TTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGT 47494 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784 | || || | |||| || || || || || ||||| || | || | |||||||| | Sbjct 47495 AAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGT 47554 Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATG-TACCATTTGTTCCAGAAATATAA 76843 | | || | | ||| || | ||||||||| | || ||| || || || | ||| || Sbjct 47555 TGAAGACGCGGAGCATGGGCACAATGCCGTT-GCTGACACCGTTGGTGCCGGCAATGTAC 47613 Query 76844 CTTCCACATGCACGAATATTACTAATAGAT----AGGCCTATTCCTCCTGCCATTTTAGA 76899 || |||| || ||| ||| ||||| || || || ||| | || || Sbjct 47614 GAGCCGGTGCCACGGAT----GCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGA 47669 Query 76900 GATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTT 76959 ||| | ||||| || | || || |||||||| || || |||||| ||||| | Sbjct 47670 GATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGT 47729 Query 76960 AAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGA 77019 || ||| || || || | || | || || || || || || | ||||| || Sbjct 47730 AACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGA 47789 Query 77020 TGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT-TCTATAT 77078 || || || || | |||| || | || ||||| || || || | ||| || || | Sbjct 47790 GGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGC-GCTCTCGATGT 47848 Query 77079 CCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCT 77138 || || || || |||||||| ||||| | ||| ||||| || || ||| | || Sbjct 47849 CCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCT 47908 Query 77139 TATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 77198 | || || | ||| || || || | || || || || ||| ||||||| Sbjct 47909 TGCCGTTGATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGT 47968 Query 77199 AAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTT 77241 ||||| | |||||| || || |||| | || | |||||| Sbjct 47969 GGAAGTCACGTTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 48011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712891918021440