Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2497 145 9e-30 seq11 87.8 2e-12 >seq2497 Length=103896 Score = 145 bits (160), Expect = 9e-30 Identities = 472/730 (65%), Gaps = 10/730 (1%) Strand=Plus/Plus Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 54007 || ||||||||||| || | | | ||| ||||| || || | || ||||| | | Sbjct 43865 CGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGC 43924 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 ||||| || |||| | || || | ||||| ||||||||||| | ||| || || ||| Sbjct 43925 GACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGC-ATA 43983 Query 54068 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 || || || | | | ||||| ||||| ||||| || ||||||||| | Sbjct 43984 GAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 44043 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | | || || ||||| ||||| | ||| || | | | || || || ||||| || Sbjct 44044 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCC 44103 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 ||||| || | ||| | || ||||| || | || | | ||| || | ||| || || Sbjct 44104 ACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT 44163 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-- 54304 | |||| ||||| |||| || || || || |||| || ||| ||| Sbjct 44164 GCTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGC----AATGGATGT 44219 Query 54305 --AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 || || || || || ||| | || ||||| | || || || | ||||| |||| Sbjct 44220 TGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGA 44279 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 |||| || || |||||| ||||| ||| || || || || | || | | Sbjct 44280 TGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCG 44339 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 || || || || || | ||||| || ||||| ||||| | |||| || | || | Sbjct 44340 GGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGT 44399 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 54542 ||||||||||||| || || || ||| || || || || ||||| ||||| | Sbjct 44400 TGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGA 44459 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 ||||||||| || | || ||| |||| ||| || ||||| ||||| || | Sbjct 44460 GCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGA 44519 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGA 54662 || || || || ||| ||||||| ||||| |||||||| || || | |||| || Sbjct 44520 GCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATGATGGCCGAGTCGA 44579 Query 54663 GTTTATCCTT 54672 | | ||||| Sbjct 44580 GCTGGTCCTT 44589 >seq11 Length=69059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/234 (68%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| ||||||||||| | || | |||||||| |||||||| |||||||| || || Sbjct 34291 GTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACC 34350 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 ||||| || ||||| || || || || ||||| || || || || || || || || || Sbjct 34351 GCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGC 34410 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGC 24325 ||||| || | || | || | || ||| | |||| ||||| |||| Sbjct 34411 GGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGC 34470 Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||| |||||||||| || || || || ||||| | || | ||| ||||| Sbjct 34471 CCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATA 34524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593699795574240