Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11 390 1e-103 seq2938 143 3e-29 seq2728 114 1e-20 seq2166 113 5e-20 seq2337 102 8e-17 >seq11 Length=69059 Score = 390 bits (432), Expect = 1e-103 Identities = 435/574 (76%), Gaps = 15/574 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | ||||| Sbjct 34833 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34774 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||||| | |||||||||| |||||||| || ||| | Sbjct 34773 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTATCTCG 34714 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || ||||| || || ||||| || || || |||||||||||||| || || |||||| Sbjct 34713 CATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCGT 34654 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||| || |||| |||||||| || ||||||||||| || |||||| ||| Sbjct 34653 TTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGATG 34594 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC----GTGCGCTCTTC 116928 |||||| | |||||||| | || ||| ||||||||||| ||| ||| || || Sbjct 34593 GAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAGC-CTGA 34535 Query 116929 GGAG-GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || | ||| || ||||| ||||| ||||||| || ||| |||||| |||||| Sbjct 34534 GCAGCGTGAATATCTGTTTG----ACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAGG 34479 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTG 117046 |||| ||||| || || |||||| || || || | ||| | |||| |||||| ||||| Sbjct 34478 CCGACTGGGCTCTTCGATGGATCAGCGACA-AGCGTGCCACTTTCGCCGAGCGTCTGGTC 34420 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || || |||||||||||| |||| || |||||| |||||| | || || |||||| Sbjct 34419 GCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCTC 34360 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| ||||| ||||||||||| || || ||| ||||||||||||||| | |||||| Sbjct 34359 AAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGAG 34300 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||| || ||||||||||| | || |||| Sbjct 34299 GGTCTTCACACGGACTTTGCCTGCCTTCTCTTCA 34266 >seq2938 Length=227349 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||||||||||||||| ||||| || |||| ||||| || | Sbjct 129339 ATGCAGATTTTTGTTAAAACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 129280 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||| || | || || Sbjct 129279 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 129221 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 129220 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAA 129161 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||| ||| | ||||| || || |||||||| Sbjct 129160 CATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCG 129125 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| ||||| |||||||| |||| ||||| | | Sbjct 129111 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 129052 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||| || | || || Sbjct 129051 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 128993 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | ||||| || |||||||| Sbjct 128992 GCAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAA 128933 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| |||||||| |||| || || Sbjct 128932 CATTCAGAAGGAATCCACTCTTCA 128909 >seq2728 Length=83621 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || |||||||| || |||||||| |||| || || | Sbjct 80046 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 80105 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| |||||||| || | ||| Sbjct 80106 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 80165 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || ||||| || |||| || || || |||||| Sbjct 80166 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTAC 80225 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||| | || ||||| Sbjct 80226 AACATCCAGAAGGAGTCTACCCTGCA 80251 >seq2166 Length=204 Score = 113 bits (124), Expect = 5e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || ||||| |||| |||||| | | Sbjct 190 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAAGTCGAATCGTCA 131 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || || | ||||| ||||| |||||| | |||||| Sbjct 130 GACACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAG 71 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || || ||||| || |||| ||||| ||| ||||||||| Sbjct 70 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAAC 11 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 10 ATCCAGAAGG 1 >seq2337 Length=130298 Score = 102 bits (112), Expect = 8e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||| ||| | || || || || | |||| | | | | |||||| Sbjct 31427 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 31486 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| || ||| | |||||||| || || |||| ||| || || Sbjct 31487 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 31546 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | ||||||||| |||||||||||||||||||| | || || || Sbjct 31547 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 31606 Query 40894 CTAGTG 40899 || ||| Sbjct 31607 CTTGTG 31612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515200278574880