Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2938 156 4e-33 seq2728 122 8e-23 seq2166 96.9 3e-15 seq2337 93.3 4e-14 >seq2938 Length=227349 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | || |||||| | ||| | || |||||||| ||||||||||| ||| Sbjct 129111 TACCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGG 129170 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || |||||||| || |||||| ||||||||||||||||||| |||| Sbjct 129171 AGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAG 129230 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| || || || || | |||| |||||||| | ||||| Sbjct 129231 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGA 129290 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || | || ||||| || || ||||| |||||||||||||| Sbjct 129291 CTTCGAGAGTAATGGTCTTGCCCGTGAGCGTTTTAACAAAAATCTGCAT 129339 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || || ||||||||||| || || |||||| ||| ||| Sbjct 128903 ACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCG 128962 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct 128963 AGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGG 129022 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||||| |||||| |||| || | || ||| Sbjct 129023 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTG 129082 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| Sbjct 129083 CCTGTGAGCGTCTTGACAAAGATCTGCAT 129111 >seq2728 Length=83621 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | |||||||| || || |||||||| || | || || ||||| Sbjct 80258 CACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCCTC 80199 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || |||||| |||| ||||||||||| ||||| || |||||||||||||| Sbjct 80198 GAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTG 80139 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||||| ||| ||||||| || | || || Sbjct 80138 GATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTCTT 80079 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| Sbjct 80078 ACCCGTGAGGGTCTTGACAAAGATCTGCAT 80049 >seq2166 Length=204 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| || || ||||| || ||||| ||||| Sbjct 3 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATG 62 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || || || || ||||||||||| || || || || | ||| Sbjct 63 AGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 122 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||| | ||||| |||| || | ||| |||||||||||||| || ||||| Sbjct 123 ATTGTGTCTGACGATTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAG 182 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 183 ATCTGCAT 190 >seq2337 Length=130298 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || || || || || |||||||| || | ||||| |||||| Sbjct 31612 CACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTC 31553 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || |||||||| ||||| || || ||||||||||| Sbjct 31552 GAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTG 31493 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699 ||| || || || | |||| |||||||| | ||| ||||| | ||| Sbjct 31492 AATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGT 31442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433814865889096