Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2497 459 2e-124 seq11 192 5e-44 seq2938 105 6e-18 seq2166 102 7e-17 seq2728 89.7 5e-13 >seq2497 Length=103896 Score = 459 bits (508), Expect = 2e-124 Identities = 1244/1881 (66%), Gaps = 44/1881 (2%) Strand=Plus/Plus Query 22115 GTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGA 22174 ||||| || || ||||| | ||||| ||||| || ||||| ||| | |||||||| || Sbjct 42716 GTAAATTGGATCGCGTTCGACGCCGGCTTGGTTCGCAGATAGTACGTACCCGTCTTGAGT 42775 Query 22175 CCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATG 22234 ||| | ||||| ||||||| || ||||| || | | |||| | |||| | | Sbjct 42776 CCCTTTTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGGTGCCGAAAGG 42835 Query 22235 TACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATC 22294 | | |||| |||||| ||| ||||||||||||||| || || ||||| | | Sbjct 42836 TGAATGTTGAGCGACTGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATGT----C 42891 Query 22295 AATGTACGCATC--GAC--ATTTCCCATACGGTCTTGTACAGTTGCCTGAT-CTCTAACG 22349 ||| ||| | | | || ||||| || ||||||||||| | | |||| | | | | Sbjct 42892 GATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCA-G 42950 Query 22350 GTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTAT 22409 | || | | |||||| || ||| | ||||| || || ||||| | Sbjct 42951 GAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGT 43010 Query 22410 CGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGG-TTCACCACTTGAAAC 22468 ||||||||| || | || || | || | |||| |||||||| || ||| Sbjct 43011 CGTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACA-ACCACGGGTTCACCACCTGGAAC 43069 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || | | || || || ||| |||||||| || | || ||||| | || || Sbjct 43070 TCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTA 43129 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 ||||| |||||| |||||||||||||||||||| |||| ||| |||||||| | Sbjct 43130 AAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGA 43189 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||||| | || || ||||||| || |||||||||||| || |||||||| Sbjct 43190 AGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTG 43249 Query 22649 ACATTGTCCCACATATCGTATTGCAA--CACGCCGCGACTCGCCGGGCTGCCTTCGTACG 22706 || ||||||| ||||| ||||| ||| | |||| || || ||| |||||| Sbjct 43250 AC---CCCCCACATGTCGTACTGCAACTCACCCTGCGA--AGCGGGCGAGCCGGCGTACG 43304 Query 22707 TTTCGTACGGACCATATATCGCGGCAAGTTCGCA-GCTCGCCTCCAACGCGCCGTAATAT 22765 | ||||| || | | | || || ||||| | ||| ||||| ||| ||| || Sbjct 43305 TCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCG-CTCCAGTGCGGCGTGGTAG 43363 Query 22766 ATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GCGGCGACGCTTTCGTACGGCATA-C 22823 || ||||| ||||| | | |||| | ||| || || || | || || ||||| | Sbjct 43364 ATGGTCTCAAAGATCTGCACGTTC-AGTCGCCGAGCCTCGGCCGACTCAAAC-GCATACC 43421 Query 22824 GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 ||| |||| |||||| ||||| | |||||||| || || |||||||| |||| || Sbjct 43422 CCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCA 43481 Query 22884 GATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGT 22943 || ||| ||||| | ||||| | || ||||| | |||||| || Sbjct 43482 TGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGT 43541 Query 22944 TTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC-----CGA 22998 | || | || | | | |||||||| ||| | | Sbjct 43542 TCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGT--ACGTCTTGGTCAC 43599 Query 22999 TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058 | | ||| ||| || | ||||||||||| || ||||| || ||||||||||| Sbjct 43600 TGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTC--G 43657 Query 23059 GGA-CG-TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 ||| || ||||||| | || |||||||| | ||| ||||| |||||||| | || Sbjct 43658 GGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTC 43717 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 |||||||||| || || ||| | |||||||| || ||| | || ||||||||||| Sbjct 43718 TTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCG 43777 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG 23236 ||| ||||||| ||| || ||| | |||| || | || ||| | | Sbjct 43778 GTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGA 43837 Query 23237 CCTTCTTCCTCGTACTTTTGGTACA-ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAG 23295 || || ||||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| Sbjct 43838 CCCTCGGCCTCGTAGCGCTCGTAGAGGCGC-TCAAACTCGTCACCGTAGCAGTCGGCCAG 43896 Query 23296 GCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCAT 23355 || || | | | || |||||||| ||| || | || || | |||| Sbjct 43897 ACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCAT 43956 Query 23356 AAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCC 23415 || ||||| || | ||| || || ||||| || || || || ||||||||||| || || Sbjct 43957 GAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCC 44016 Query 23416 GGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAAC 23475 | |||||| || || | || || || ||||||| ||||| || || | ||||| Sbjct 44017 GTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAAT 44076 Query 23476 GGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTA 23535 ||||| || || || | ||| ||||| ||||| |||||||| || || ||||||||| | Sbjct 44077 AGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAA 44136 Query 23536 CACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACC 23595 || | ||||| ||||| | |||||| | ||| ||| || | ||| || Sbjct 44137 GACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC 44196 Query 23596 TTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 | | || | | || | || || || ||||| ||| ||| || || ||||| || Sbjct 44197 GGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGC 44256 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 || || || || ||||||||||| ||||| ||| || || | | || | ||| Sbjct 44257 ACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAA 44316 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 ||||| || | |||| | || ||| |||| ||| || || || |||||| || Sbjct 44317 GCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGT 44376 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 |||||| | |||||| || |||||||| ||||||||| || ||||||| ||||| Sbjct 44377 AAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTG 44436 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTT 23892 || |||| ||||| ||||| | ||||| || || | || ||||| | |||||| Sbjct 44437 GATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTT---GCCGTT 44493 Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 || || || ||| ||||| | | ||| || || || ||| ||| |||| ||||| Sbjct 44494 GATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTC 44553 Query 23953 ACGATCGTGCACTATGGCCGA 23973 ||| |||| | |||||||| Sbjct 44554 ACGTTCGTAGATGATGGCCGA 44574 >seq11 Length=69059 Score = 192 bits (212), Expect = 5e-44 Identities = 562/855 (66%), Gaps = 47/855 (5%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| || || || || ||||||| || || | ||||| Sbjct 34833 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34774 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||||| | || || || |||| | | ||||| Sbjct 34773 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTATCTCG 34714 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || ||| | ||||| ||||| || || |||||||| || |||||||| | || || | Sbjct 34713 CATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG- 34655 Query 57747 TTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| ||||| || | | ||||| | ||||| ||||| || || | | Sbjct 34654 -TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGA 34596 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || | || ||||| |||||||| || ||| | || | Sbjct 34595 TGGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGA----G 34540 Query 57865 AC-GAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG--- 57917 | ||| | ||| | ||||| |||| |||| || || || | ||| |||| Sbjct 34539 CCTGAGCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGG---TCGTCAAGCAG 34483 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG---GCCACGTTCGCCGAGAGG 57974 ||||| || ||| | | |||||| | ||| || | ||||| ||||||||| | Sbjct 34482 AAGGCCGACTGGGCTCTTCGATGGATCA---GCGACAAGCGTGCCACTTTCGCCGAGCGT 34426 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || ||||||| ||||||||||| || || || || |||||| || || | || || Sbjct 34425 CTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTC 34366 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| ||||| || |||||||| || ||||| ||||||| | || ||||| Sbjct 34365 TGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGT 34306 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 ||||||||||| || || || ||||| ||||| | | | ||| ||| | | Sbjct 34305 GACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCTTCAGCCAC---CTCAGGA----G 34253 Query 58155 ACGCGGGATCGCA-------TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGA 58207 |||| | | || | | | || ||||| ||||| || | || || || | Sbjct 34252 GCGCGCGCACCCAGACACGGTGCTCAAGATCATCACTGAGGCTGTGGAAATTGAGAAGGC 34193 Query 58208 GTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAA 58267 ||| | |||| | | || || || | |||||||||||| | | |||| | Sbjct 34192 GTTCCTGTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCAAGCTCATGTGCCA 34133 Query 58268 GTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGC--GT-CATTA 58324 |||||||||| ||| ||||| | ||||| | | | | ||| | | || || || Sbjct 34132 ATACATTGAGTATGTCGCCGA---TCGCTTGCTGGTATCGCTCGGAAACCCAGTGCACTA 34076 Query 58325 CAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTT 58384 | | | | | ||||||||| ||||||| || ||| | || |||||||| ||||| Sbjct 34075 CGGCTCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTT 34016 Query 58385 TTTCGaaaaaaaaGT 58399 || || ||||| || Sbjct 34015 CTTTGAGAAAAAGGT 34001 >seq2938 Length=227349 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || |||||||| || ||||| |||| || || | || Sbjct 129111 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 129052 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||||||| | || || || ||| Sbjct 129051 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 128992 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | ||||| | ||| || || || ||| Sbjct 128991 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 128932 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || ||||| |||||||| |||| ||| Sbjct 128931 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTT 128899 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || || || || ||||| || || || |||| || || | || Sbjct 129339 ATGCAGATTTTTGTTAAAACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 129280 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || || || ||| Sbjct 129279 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 129220 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | |||||| || | ||| || ||| Sbjct 129219 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 129160 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| ||||| ||||| ||||| || || Sbjct 129159 ATTCAGAAAGAGTCGACGCTTCACCTTGT 129131 >seq2166 Length=204 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| ||||| |||||||| |||| || ||| |||| Sbjct 190 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAAGTCGAATCGTCA 131 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| || | || || |||||| Sbjct 130 GACACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAG 71 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || ||||| || ||| | |||||| Sbjct 70 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAAGAC 35 >seq2728 Length=83621 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| || || || || || ||||| |||| || || | Sbjct 80046 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 80105 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | ||||||||| Sbjct 80106 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 80165 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||||| || |||||||| || ||| | || ||| Sbjct 80166 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGAC 80204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750029228960