Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2497 122 1e-22 seq11 109 7e-19 >seq2497 Length=103896 Score = 122 bits (134), Expect = 1e-22 Identities = 446/695 (64%), Gaps = 10/695 (1%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | |||||| || |||| | || || | ||||| || Sbjct 43900 AGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAA 43959 Query 63281 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 ||||||||| | ||| || || ||| || || || | | | ||||| ||||| Sbjct 43960 GAGATCAGGCACCCAGAGTGC-ATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGT 44018 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 ||||| || ||||||||| | | | || || ||||| ||||| | ||| || | Sbjct 44019 GGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAG 44078 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | || || || ||||| || ||||| || | ||| | || ||||| || | | Sbjct 44079 CAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGA 44138 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 | | | ||| || | ||| ||||| | ||| ||||| |||| || || || Sbjct 44139 CGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCGG 44198 Query 63520 TGGCACGAATATTACTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63575 || |||| || ||| ||| || || || || || ||| | || ||||| | Sbjct 44199 TGCCACGGATGC----AATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATG 44254 Query 63576 GCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGA 63635 || || || | || || |||||||| || || ||||| ||||| ||| || Sbjct 44255 GCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGG 44314 Query 63636 AAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63695 || || || | || | | | || || || || || | ||||| || ||||| Sbjct 44315 AAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGG 44374 Query 63696 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63755 ||||| | |||| || | || ||||||||||| || || || || ||| Sbjct 44375 GTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCG 44434 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 || || || || ||||| ||||| | ||||||||| || | || | | ||| ||| Sbjct 44435 TGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTG 44494 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 || | ||| ||||| || | || || || || ||| ||||||| ||||| Sbjct 44495 ATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCA 44554 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 |||||||| || || |||| | ||||| ||||| Sbjct 44555 CGTTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 44589 >seq11 Length=69059 Score = 109 bits (120), Expect = 7e-19 Identities = 353/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| ||||||||||| | || | ||||| || |||||||| |||||||| || || Sbjct 34291 GTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACC 34350 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||| || ||||| || || || |||||||| || || || ||||| || || || || Sbjct 34351 GCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGC 34410 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGC 33772 ||||| || | || | ||| | || ||| | |||| ||||| |||| Sbjct 34411 GGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGC 34470 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832 ||| |||||||||| || || || || || || | ||| | ||| ||||| | Sbjct 34471 CCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACG 34530 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 | | | || | ||||| ||||| | || || | ||||| || ||||| Sbjct 34531 CTGCTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCCGAGTGGATGTT 34590 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || || ||||| || |||||||| || | |||||||| ||| ||||| | || Sbjct 34591 CTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACT 34650 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 || || || | | || || || || || ||||| || || || ||||| | || Sbjct 34651 GAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCAC 34710 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCAATCATTGATATCTT 34068 ||| ||||| | || | || ||| || || || ||| || | || || | Sbjct 34711 ATGCGAGATAAAGTGGCGCTCAT-TGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCT 34769 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | || | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 34770 TGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC 34829 Query 34129 AGAT 34132 | || Sbjct 34830 AAAT 34833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629794469948640