Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2497 122 1e-22 seq11 96.9 5e-15 >seq2497 Length=103896 Score = 122 bits (134), Expect = 1e-22 Identities = 467/730 (64%), Gaps = 10/730 (1%) Strand=Plus/Plus Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 66038 || || |||||||| || | | | ||| ||||| || || | || ||||| | | Sbjct 43865 CGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGC 43924 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 ||||| || |||| | || || | ||||| ||||||||||| | ||| || || ||| Sbjct 43925 GACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGC-ATA 43983 Query 66099 -AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 || | || | | | ||||| ||||| ||||| || ||||||||| | Sbjct 43984 GAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 44043 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | | || | ||||| ||||| | ||| || || | | || || || ||||| || Sbjct 44044 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCC 44103 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 ||||| || | ||| | || ||||| || | || | | ||| || | ||| || || Sbjct 44104 ACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT 44163 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT-- 66335 | ||| ||||| |||| || || || | |||| || ||| ||| Sbjct 44164 GCTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGC----AATGGATGT 44219 Query 66336 --AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 66393 || || || || || ||| | || ||||| | || || || | ||||| |||| Sbjct 44220 TGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGA 44279 Query 66394 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 66453 |||| || || |||||| ||||| ||| || || || || | || | | Sbjct 44280 TGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCG 44339 Query 66454 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 66513 || || || || || | ||||| || ||||| ||||| | |||| || | || | Sbjct 44340 GGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGT 44399 Query 66514 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 66573 |||||||||| || || || || ||| || || || || ||||| ||||| | Sbjct 44400 TGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGA 44459 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 ||||||||| || | || ||| |||| ||| || | ||| ||||| || | Sbjct 44460 GCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGA 44519 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 66693 || || || || ||| ||||||| ||||| |||||||| || || |||||| || Sbjct 44520 GCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATGATGGCCGAGTCGA 44579 Query 66694 GTTTATCCTT 66703 | | ||||| Sbjct 44580 GCTGGTCCTT 44589 >seq11 Length=69059 Score = 96.9 bits (106), Expect = 5e-15 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| ||||||||||| | || | |||||||| |||||||| |||||||| || || Sbjct 34291 GTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACC 34350 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 ||||| || ||||| || || || || ||||| || || || || || || || || || Sbjct 34351 GCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGC 34410 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATGTATCCACTTTTGAGC 36348 ||||| || | || | ||| | || ||||| |||| ||||| |||| Sbjct 34411 GGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGC 34470 Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||| |||||||||| || || || || ||||| | || | ||| ||||| Sbjct 34471 CCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATA 34524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658148628603920