Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2938 118 1e-21 seq11 84.2 2e-11 >seq2938 Length=227349 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||||| ||| |||||||| |||||||| || ||| | || | | Sbjct 129125 CGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCG 129184 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||||||||| |||||||| |||| ||||| |||||||| ||||| |||||||| ||| Sbjct 129185 TCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTG 129244 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | || ||| || || | || | Sbjct 129245 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATG 129304 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | |||||| || || || ||||| Sbjct 129305 GTCTTGCCCGTGAGCGTTTTAACAAAAATCTGCAT 129339 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||||| || || || || |||||||| || || Sbjct 128884 GCCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 128943 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||||||||| || || ||| |||| ||||| |||||||| ||||| Sbjct 128944 CAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGG 129003 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 129004 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 129063 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| || | ||| || || || || |||||| Sbjct 129064 TTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCATA 129112 >seq11 Length=69059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 52606 GCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGT 52665 |||||||| ||||| ||||||||||||||||| || || || | ||||| ||||| Sbjct 34443 GCCACTTTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGC 34384 Query 52666 AGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAG 52724 || || | || || | |||| || | || | | |||||||| |||||||| Sbjct 34383 TCATTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGTC-TCATGCCCGGTCTCACGTTCTC 34325 Query 52725 CAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772 ||||||| | || ||||| ||||| || | ||||| || ||||| || Sbjct 34324 CAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGCCTG 34277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496045782049600