Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1195 170 3e-38 >seq1195 Length=23382 Score = 170 bits (188), Expect = 3e-38 Identities = 186/246 (76%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 16447 CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCG 16506 ||||||| | ||||| |||||||| || ||||||||||| |||||||||||||| || || Sbjct 22445 CAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTATCCGTCGTCTTGCGCG 22387 Query 16507 TCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 ||| ||||| ||||||||| ||||||| | |||| || |||| |||| |||| |||| Sbjct 22386 TCGAGGTGGTGTCAAGCGTATCTCTGGTCTTATCTACGACGAGACCCGTGGTGTTCTGAA 22327 Query 16567 GATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAA 16626 | |||||||| || | || || | ||| | || ||| || |||||||| || || || Sbjct 22326 GCTCTTCCTCGAGTCGGTGATTCGTGACTCGGTCACCTACACTGAGCACGCCAAGCGCAA 22267 Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686 ||| |||||||| | || | || || ||| | || || || ||||| | | || || Sbjct 22266 GACCGTCACCTCGCTCGACGTTGTTTACGCACTCAAGCGCCAGGGCCGCACCCTGTACGG 22207 Query 16687 TTTTGG 16692 ||| || Sbjct 22206 TTTCGG 22201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072513766034