Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2938 89.7 4e-13 >seq2938 Length=227349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| |||||||||||||| || |||||||| ||||| |||||| Sbjct 129339 ATGCAGATTTTTGTTAAAACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 129280 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| || || || || || || |||||| | || |||||| Sbjct 129279 GACAC-CATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 129221 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | || || || || | ||||| | | ||| | |||| || || Sbjct 129220 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAA 129161 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| |||||||| || | || | |||||| || | || || || Sbjct 129160 CATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCGACTCCGCGGTGG 129113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425328769760560