Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2268 140 2e-28 seq2276 138 8e-28 seq2222 104 2e-17 >seq2268 Length=1468 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1440 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1381 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1380 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1346 >seq2276 Length=143999 Score = 138 bits (152), Expect = 8e-28 Identities = 213/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| ||||||||| ||| ||||| | || ||||| ||||||| | Sbjct 114599 ATGTCGACGACAAGTTCTACCGTTACCGCATGCCCCTGCTCCAGACCAAGATCGAGGGCA 114540 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| |||||||| || |||||||| ||||||| |||| | ||| | ||| | | Sbjct 114539 AGGGCAACGGTATCAAGACCGTCATCCCCAACATGTCTGACATTGCTCGTTCCCTCAGCC 114480 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 | ||| ||||||||||||| || | |||||| ||||| || ||||| || || ||||| Sbjct 114479 GTCCTCCCACCTACCCGACCAAGTTTTTCGGCTGCGAGCTCGGCGCCCAAACCTCGTTTG 114420 Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426 | | || ||||| || | ||| || ||||| | || | | | | || | || Sbjct 114419 ACGAGAAGAACGATCGTTACATTGTCAACGGTGCCCACGATGCCGACCGTCTTCGCGAGC 114360 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 | ||||||||||| || ||||||||| || || | || ||| | ||||| || |||| Sbjct 114359 TGCTTGACGGCTTCATCGACAAGTTTGTCCTCTGCGGCGACTGCAAGAACCCCGAAACCG 114300 Query 6487 AGCT 6490 | || Sbjct 114299 ATCT 114296 >seq2222 Length=2313 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 569 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 628 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 629 CCCAATATTTAGCCTTA 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334935206587478