Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq406 104 5e-17 >seq406 Length=48282 Score = 104 bits (114), Expect = 5e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||| || || || ||||| | ||||||||||| || |||| || |||||||| ||| Sbjct 25362 GGTGAAGACCTCTGCAACTGTCAGTTCTCGCTCGCCTACGGTGCCAAAATTCTGCTCAAC 25421 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || || ||| | |||||||||| || ||| |||||| ||||| || || | Sbjct 25422 ACTGCCACTCTCCGCCTCAAGCGTGGTCACAAGTACGGTCTCTGCGGTCGTAACGGTTCC 25481 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| || || ||||||||||| | ||||| ||| | ||||| || ||| | Sbjct 25482 GGAAAGTCTACCCTCATGCGCGCCATCACCAACGGCCAGGTCGAAGGCTTCCCTTCGCCC 25541 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 |||||| | || ||| || ||||||||| | ||| |||| Sbjct 25542 GATGAGGTCCGAACCTGGTACGTGGAGCACGACTTGGACGGCTCT 25586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027798109010858