Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2938 179 7e-40 seq2728 167 4e-36 seq2337 127 4e-24 seq2497 102 2e-16 seq406 98.7 2e-15 >seq2938 Length=227349 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | |||||||| || ||||| || || || ||||| || || || Sbjct 128885 CCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 128944 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || | || || || || ||| Sbjct 128945 AGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGA 129004 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||||||| ||||||||||| | || || ||| Sbjct 129005 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACT 129064 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| |||||||| || |||||||| Sbjct 129065 TCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 129111 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||||| || | ||| ||||| |||||||| || ||||| || |||||| Sbjct 129113 CCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 129172 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| ||||| | || || || || ||| Sbjct 129173 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 129232 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||||| ||||||||||| | || || ||| Sbjct 129233 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 129292 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || |||||||| || || || || |||||||| Sbjct 129293 TCGAGAGTAATGGTCTTGCCCGTGAGCGTTTTAACAAAAATCTGCAT 129339 >seq2728 Length=83621 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || || || Sbjct 80275 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 80216 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || |||||||| ||| Sbjct 80215 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 80156 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 80155 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACC 80096 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||||||||||||||| || |||||||| Sbjct 80095 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 80049 >seq2337 Length=130298 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || || || |||||||| || || ||| Sbjct 31629 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 31570 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || |||||||| ||| Sbjct 31569 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 31510 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| |||||||| ||||||||||| | || || || Sbjct 31509 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 31450 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||| ||||| || || || Sbjct 31449 TCAAGGGTAATGGTCTTACCTGT 31427 >seq2497 Length=103896 Score = 102 bits (112), Expect = 2e-16 Identities = 218/326 (67%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||| ||| ||||| | || |||| |||| ||||||| ||| | ||| || | Sbjct 43640 CACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCAC 43699 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTTCACGCTGTCCTTGTTGAGCACG 31820 |||| |||||| || ||| || |||| ||| || |||||||| || | | Sbjct 43700 TTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATG 43759 Query 31821 TAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTTG 31880 |||| ||||||||||| |||| | || || || | ||||| | |||||||| Sbjct 43760 AAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTG 43819 Query 31881 ACGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCTTG 31940 ||| ||||| || ||||||| ||||||||| || ||| ||| |||| | Sbjct 43820 ACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCA 43879 Query 31941 CCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCG 32000 || || |||| ||||| || ||||| |||||| | ||||||||| || | | Sbjct 43880 CCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTC 43939 Query 32001 GCCTCTACTCGCTTCATGAACAGGTC 32026 ||| || | ||||||||| || || Sbjct 43940 TGCTCGACCCTCTTCATGAAGAGATC 43965 >seq406 Length=48282 Score = 98.7 bits (108), Expect = 2e-15 Identities = 359/549 (65%), Gaps = 26/549 (5%) Strand=Plus/Minus Query 225458 GAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGA-TGAG 225516 |||||||| ||||||||||||| | | || | ||| ||||| || | ||| Sbjct 25888 GAGTCGTGCGACACAATGATGGCGGTGGCAGTCTTGAGGTTGACGAGGTA-GTCAGTGAT 25830 Query 225517 CCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGC 225576 ||| |||||| ||||||| |||||| ||||| || || || |||| ||||| || Sbjct 25829 CCACTTGACGTTGACAACGTCCAAGTGGTTGGTAGGCTCATCGAGCAGCAAAATGTCGGC 25770 Query 225577 ATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCC 225636 | | |||||||| || | || | | |||||| ||||| || || || || | | Sbjct 25769 CTTGAACAGGATGGCACGGGCAAGGGCGACCTTCATCTTCCAACCACCAGAGAGACCGGC 25710 Query 225637 GATTGAAACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGGATAAT 225693 ||| | |||| || | || ||||| |||||| ||| |||| || || | Sbjct 25709 GATGGGC---GAGTTCTGACGGGCATCGTCGAAGCCGACCTCGTGGAGGGTAGCGACA-- 25655 Query 225694 GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA--TCATATACG 225751 || |||| | | | || | ||| | | |||| | || | ||| || || Sbjct 25654 GC-CTCGTCGCGGGT-CATGCTGAGACGCTCG--TCGG-CAAG-GATAAACTCGAGAACA 25601 Query 225752 GTCATGTCCGAGAC----AGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTG 225807 |||||| |||| ||| |||| | |||||| ||||||||| || |||| || Sbjct 25600 GTCATG----AGACCCTCAGAGCCGTCCAAGTCGTGCTCCACGTACCAGGTTCGGACCTC 25545 Query 225808 AGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTT 225867 | | |||||||| || | |||||| || | || || || | |||||| ||| Sbjct 25544 ATCGGGCGAAGGGAAGCCTTCGACCTGGCCGTTGGTGATGGCGCGCATGAGGGTAGACTT 25485 Query 225868 GCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGT 225927 || | ||||| ||||| ||| ||||| | | || ||||||| | ||| | Sbjct 25484 TCCGGAACCGTTACGACCGCAGAGACCGTACTTGTGACCACGCTTGAGGCGGAGAGTGGC 25425 Query 225928 GGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTC 225987 | ||| || || || ||| |||| ||||| || ||||||| || | ||| ||||| || Sbjct 25424 AGTGTTGAGCAGAATTTTGGCACCGTAGGCGAGCGAGAACTGACAGTTGCAGAGGTCTTC 25365 Query 225988 ACCCTCCTC 225996 ||||||||| Sbjct 25364 ACCCTCCTC 25356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921588553417360