Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2497 408 8e-109 seq11 316 4e-81 >seq2497 Length=103896 Score = 408 bits (452), Expect = 8e-109 Identities = 1234/1876 (66%), Gaps = 85/1876 (5%) Strand=Plus/Plus Query 243743 AACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCC 243801 || |||| || || ||||| |||| ||||| | ||| |||||| | || ||||||||||| Sbjct 42719 AATTGGATCGCGTTCGACGCCGGC-TTGGTTCGCAGATAGTACGTACCCGTCTTGAGTCC 42777 Query 243802 ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTC 243861 | |||| ||| | |||||| | || |||| | || | | |||| Sbjct 42778 CTTTTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTG-TCCA-----AAC-----GTCG-- 42824 Query 243862 CTCGCACAGAAAG----AGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTG 243917 | | ||||| | |||||| ||||| |||| || || | | || || | Sbjct 42825 ---GTGCCGAAAGGTGAATGTTGAGCGACTGCGACTGGCAGATAAACGCTCCTCGGTCCG 42881 Query 243918 CGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGA 243977 | |||||| ||||| ||||||| ||||| | |||||||||| | ||||| Sbjct 42882 CAGCCATGTCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTTCTTGA 42941 Query 243978 GGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGC 244037 | | || || | ||| | |||||| | ||| || ||| |||||| || | Sbjct 42942 TGCGGTCAGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGATACGGTTCT 43001 Query 244038 GCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCT---GTTCA 244094 ||| | ||||||||||||||| |||||| | |||| || || ||||| Sbjct 43002 TCATCGTGTCGTTCCACAGGCCCT---GCTCCACCAGCTCGCGCAACAACCACGGGTTCA 43058 Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 ||||||| ||||| |||| ||||| || || ||||| |||| | ||||||| Sbjct 43059 CCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGA 43118 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 || ||| | |||||| ||||| ||| || |||||||| || | || ||||| Sbjct 43119 AGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCA 43178 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGC 244274 | ||| | | |||||| | ||| | ||||||| ||||||||||| | Sbjct 43179 GCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGGT 43238 Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGG 244334 |||| | ||| || ||||||||||| |||||| | |||| || | | Sbjct 43239 CCGACGG-------CGT--GACCCCCCACATGTCGTACTGCAACTCACCCT-GCGAAGCG 43288 Query 244335 GGCT-GCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG-TC 244392 ||| ||| |||| ||| |||| |||| ||| ||||||| || | ||| || Sbjct 43289 GGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCA-CGATCGCTC 43347 Query 244393 GAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GCCTTGCCGC 244451 || ||||||| |||||||||||| |||||| | ||||| ||||| | |||| | | Sbjct 43348 CAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCA-GTCGCCGAGCCTCGGCCG 43406 Query 244452 AGGTGAAGGGGATGCCC-ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | | || | || ||| || |||||||| | || || || ||||| || ||||| ||| Sbjct 43407 AC-TCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCG 43465 Query 244511 ATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 || || | ||| ||| ||||||| |||| | ||| || || || |||| | Sbjct 43466 ATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCG---ACCGGATAGTAGTTAATG 43522 Query 244568 TCGATCACCTTGTTGAGGTT---GCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 ||||| | |||||| ||||| || | || | || ||| || ||| ||| | Sbjct 43523 TCGATGATCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTG---CAGACGCTTA 43579 Query 244625 AAGTCGTACTCGTAGGGATC-CTCGG-CGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 ||||||||| | || || || || | ||| ||| | || |||| Sbjct 43580 AAGTCGTACGTCTTGG--TCACTGGGTCAATG------------AACGTGGGCAGTGCGA 43625 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 ||| |||||||| || |||||||| || | | |||||| || |||||||| | Sbjct 43626 TCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTAC 43685 Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802 | | ||| ||||||||| ||||| |||| || || ||| |||| |||| ||||| Sbjct 43686 ACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGT 43745 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||||| || ||||| || || |||||| ||| | |||||| | || ||||| Sbjct 43746 CCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGA 43805 Query 244863 GGTCCCTAGCCTTGACCGTCC--TGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 | | | || ||||| || | | ||||| ||||| ||||||||||| ||| || Sbjct 43806 GCTTCTGCGCTTTGACGGTGCGCTTCGAGCGA--CCCTCGGCCTCGTAGCGCTCGTAGAG 43863 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 | ||| |||||| || || ||| | || || |||||| ||||||||||| Sbjct 43864 GCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAG 43923 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 ||| |||||| | || |||||||| ||||||||| || || | |||||| || | Sbjct 43924 CGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATA 43983 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 |||||| || | | | | ||| ||| || |||||| | ||| || | || || Sbjct 43984 GAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 44043 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 ||||||||| |||||| || || ||||| | ||| | ||| ||||| ||||||||||| Sbjct 44044 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCC 44103 Query 245161 TCCCTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 |||||||| || | | | || | |||||||| ||| || | ||||| ||||||| Sbjct 44104 ACCCTGGTCGACGTAGCGCGC-AGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGT 44162 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACA 245279 | | ||||||||||| ||||| | ||| |||| | || | |||| | Sbjct 44163 TGCTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGA 44222 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 ||| | || ||||| ||||||||| | ||| || |||||| ||| || |||| Sbjct 44223 GGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGC 44282 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 | || || ||| ||||||| | | || ||||| || || ||||| || | ||| Sbjct 44283 CGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGG 44342 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGT 245459 | | | |||||| || || || ||||||||||||||| ||| | | || Sbjct 44343 TACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGT 44402 Query 245460 ACGTCTGGAGCAGAGC-GTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGG 245518 |||||| || | || ||||||| | ||||||||| | ||| | |||||| Sbjct 44403 ACGTCTCGA-TGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGC 44461 Query 245519 GTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGA 245576 |||||||||| ||| || | || | || | ||||| ||||| ||||||| Sbjct 44462 ATGTGCTGGGGACGCTC--TGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGA 44519 Query 245577 GCGTCTTGAACCCAAA 245592 |||||||||| || || Sbjct 44520 GCGTCTTGAAGCCGAA 44535 >seq11 Length=69059 Score = 316 bits (350), Expect = 4e-81 Identities = 580/834 (70%), Gaps = 32/834 (4%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| ||||||||| |||||||| ||||| |||||||| Sbjct 34824 ATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTTTCCAAGGAC 34765 Query 42369 ACGGCCGGCTGGGAGT-CA--CTGTCTGAGAACGAAA---AGTTTTTCCTCAAAAACATA 42422 || |||||| || ||| || || || | ||| || || | | Sbjct 34764 CTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTATC-TCGCATG--TG 34708 Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||| || || || || || ||||| |||||||| | | |||| Sbjct 34707 CTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCGTTTCAGT 34648 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| | ||||| || ||||||||||| |||||||| || |||||| Sbjct 34647 TCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGATGGAGAAC 34588 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599 | ||||| ||| ||| | ||||||| |||| ||||||| || || | || Sbjct 34587 ATCCACTCGGAGACCTACTCG---CTGCTCATCGACACTTACATCCGTGAGCCTGAGCAG 34531 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 ||| | ||||| | ||| | ||||| || || | ||||| ||||||| |||||| Sbjct 34530 CGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAGGCCGACTGG 34471 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 || || |||||| || | | | || || |||| |||| | ||||| || ||| | Sbjct 34470 GCTCTTCGATGGATC-AGCGACAAGCGTGCCACTTTCGCCGAGCGTCTGGTCGCGTTTGC 34412 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 |||||||||||||||||| ||||||||| | |||||||| ||||||||||||||| || Sbjct 34411 CGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCTCAAGAAGCG 34352 Query 42779 -GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 ||| || |||||||| ||||| ||||| ||||| |||||| | |||||||| || | Sbjct 34351 CGGTCTC-ATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTC 34293 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA---GG 42894 | | ||||||||||||||| || ||| |||||||||||| | || | || | | Sbjct 34292 ACACGGACTTTGCCTGCCTTCTCTTC---AGCCACCTCAGG---AGGCGCGCGCACCCAG 34239 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 | ||| | |||||||| ||||| ||||| || ||||||| |||||| | | Sbjct 34238 ACACGGTGCTCAAGATCATCACTGAGGCTGTGGAAATTGAGAAGGCGTTCCTGTGCGAAT 34179 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 | | ||||| | || |||| |||||| | | ||||||||| | ||||| |||| | Sbjct 34178 CAATCCCCGTCGCGCTCATCGGTATGAACAGCAAGCTCATGTGCCAATACATTGAGTATG 34119 Query 43015 TCGCCGACCATCTCCTGTGCCAGATGGG--TCTCAGCCGCCTCTACAACACGCCGTGCCC 43072 ||||||| | | ||| | | || | ||| | |||| | | | || || Sbjct 34118 TCGCCGATCGCTTGCTGGTATCGCTCGGAAACCCAG--TGCACTACGGCTCCACATGTCC 34061 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAA 43126 || ||||||||| ||||| |||||||| |||||||||||||| || ||||| Sbjct 34060 GTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTTCTTTGAGAA 34007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944304519142880