Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2497 334 8e-87 >seq2497 Length=103896 Score = 334 bits (370), Expect = 8e-87 Identities = 1085/1663 (65%), Gaps = 44/1663 (3%) Strand=Plus/Minus Query 93772 GGCAGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGC 93831 |||| ||| | ||||| || || || |||| ||||| ||||| |||| || |||||| Sbjct 44490 GGCAAGGTCGCAGAGCGTCCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGC 44431 Query 93832 CACGACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATG 93891 || ||||| || | | | | | || ||| | | ||| | |||| Sbjct 44430 CAGGACATCGAGAGCGCCATCGAGACGTACAACCTTATGTCGCAAAAGTACTTTACCCAC 44371 Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| | || || || |||||||| || |||||| || ||| | || ||||| ||||| Sbjct 44370 GCCTCGCCTACGCTCTTCAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTT 44311 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || | |||| ||||| ||| ||| || | ||| | ||||||| ||||| | Sbjct 44310 GTTACCATGAAGGATGACTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATG 44251 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || || || || ||||| ||| |||| | | |||| || || || Sbjct 44250 ATCTCCAAGACGGCCGGTGGCATCGGCCTCAACATCCATTGCATCCGTGGCACCGGCTCG 44191 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||| ||||| || | ||||||| | || || |||||||| ||||||||| Sbjct 44190 TACATTGCCGGCACCAACGGTGTCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAAC 44131 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | ||||||||||| ||||||||||| | | | ||| | || || | || Sbjct 44130 AACACTGCGCGCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCTATTTAC 44071 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | || || |||||| ||||||| | ||| |||||||||| ||||||||||| || Sbjct 44070 ATTGAACCATGGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAG 44011 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | || |||||||| || ||||||||||| || || || ||||| Sbjct 44010 GAGGAGGTGCGTGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAG 43951 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | |||||| | ||| || |||| || | || ||||| || || || || ||| || Sbjct 43950 AGGGTCGAGCAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCC 43891 Query 94372 GACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-----C 94425 ||| | || | || ||||| | | || | || ||||| | |||| | Sbjct 43890 GACTGCTACGG-TGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTC 43832 Query 94426 AAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 | || | | || | | || |||||| ||| | ||| | || |||| Sbjct 43831 GAAGC--GCACCGTCA---AAGCGCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACC 43777 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 |||||||| | || | |||| ||| ||||||| | | |||| |||| ||||||| || Sbjct 43776 GAGACGGGCAACCCTTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAG 43717 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 ||||||| ||||||| |||| || |||| |||||||| ||||||| | |||| Sbjct 43716 AACCTCGGCACGATCAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCC 43657 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665 |||||| | || ||||| ||||| | ||| ||| ||| |||| ||| | || Sbjct 43656 GACGAGGTGGCAGTGTGCAACCTCGCCTCGATCGCACTGCCCACGTTCAT------TG-- 43605 Query 94666 TACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCG-CGGGAAGG--ATG 94722 || | || ||| ||| || | ||| | || || || | |||| || Sbjct 43604 -ACCCAGTGACCAAGACGTACGA-CTTTA--AGCGTCTGCACAGCGTTGCCAAGGCCATC 43549 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 | ||||||||||| | | ||||||| |||| ||| || ||| ||||||| || Sbjct 43548 TGCAAGAACCTGAACAAGATCATCGACATTAACTACTATCCGGTCGAGGAGGCGCGCAAG 43489 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || ||| || || || || ||||| ||||| || ||||| | ||||| ||| | || Sbjct 43488 TCCAACATGCGTCACCGTCCGATCGGGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATG 43429 Query 94843 ATGAT-GCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGA 94901 || || | || || | | || || | ||| || | | |||| || | || || || Sbjct 43428 ATCATGGGGTATG-CGTTTGAGTCGGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGA 43370 Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATC-GGACGGCGGGC 94960 | ||| || ||| || || | | ||| | | ||| | || | | ||||| | Sbjct 43369 GACCATCTACCACGCCGCACTGGAGCGATCGTGCGAGCTGG-CTGAGCAGCACGGCAG-- 43313 Query 94961 CACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTG 95018 |||| ||| | ||| ||||| ||| | ||||| || |||| |||| | || Sbjct 43312 -CTACGAGACGTACGCCGGCTCGCCCGCTTCG--CAGGGTGAGTTGCAGTACGACATGTG 43256 Query 95019 GGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GAAGCTCTACGCGCTGATGTTATCAAA 95076 ||| || | ||| |||| |||| |||||| | ||||| | || || | ||| Sbjct 43255 GGGGGTCACGCCGTCGGACCTGTGGGACTGGGCGGAGCTCAAGGCCAAGA--TCGCCAAG 43198 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| | ||| ||||||| |||| || ||||| || || || ||| |||||| Sbjct 43197 CACGGGCTTCGCAACTCGCTGCTGCTGGCACCGATGCCGACCGCTTCGACGAGTCAGATC 43138 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||| ||||||| ||||| || | || |||||| | ||| |||| |||||| Sbjct 43137 CTGGGCTTTAACGAGTGCTTCGAGCCTTATACGTCCAACATCTACTCTCGGCGTGTGCTC 43078 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 || || || |||| || | ||| | | | || || ||| | | ||| || Sbjct 43077 GCGGGTGAGTTCCAGGTGGTGAACCCGTGGTTGTTGCGCGAGCTGGTGGAGCAGGGCCTG 43018 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCC 95315 ||| |||| | | ||||||| | | ||||| | ||| || |||||||| | || Sbjct 43017 TGGAACGACACGATGAAGAACCGTAT-CATCGCGCACGGCGGATCGATCCAGAACGTGCC 42959 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 || || || ||||||| ||| |||||||| || ||||||||| ||| | Sbjct 42958 AGGCATTCCTGACCGCATCAAGAAGCTGTACAAGACGGTCTGGGAGATCAGCCAGAAGGC 42899 Query 95376 GATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 ||| ||||| || || | ||| || | || ||||||||| Sbjct 42898 GATCATCGACATGGCTGCGGACCGAGGAGCGTTTATCTGCCAG 42856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494705031290480