Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2497 259 5e-64 seq11 156 4e-33 seq2728 111 2e-19 seq2938 98.7 1e-15 seq2166 89.7 5e-13 >seq2497 Length=103896 Score = 259 bits (286), Expect = 5e-64 Identities = 1066/1636 (65%), Gaps = 55/1636 (3%) Strand=Plus/Plus Query 152850 CGGTCGGCCGCCATCTCAATCAT-GCGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAA 152908 ||||| || ||||| || || || || || || || ||||||||| | || ||||||| Sbjct 42875 CGGTCCGCAGCCATGTCGATGATCGCCTTCTGGCTG-ATCTCCCAGACCGTCTTGTACAG 42933 Query 152909 ATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAAT 152968 || || | || || || || ||| | |||||| || || || ||| || | || Sbjct 42934 CTTCTTGATGCGGTCAGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGAT 42993 Query 152969 AGCGTTTCGTATTTCGGGCGTGT-ACACGTTCAGTTTAATGAGGTCATCGATCAAGTACT 153027 | || ||| | | | ||| ||| | | | | | || || | ||| || Sbjct 42994 A-CGGTTCTTCATCGTGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACAACCACG 43052 Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 |||| ||||| || ||||| ||||| | ||| || | | || | ||| || ||| Sbjct 43053 GGTTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAG 43112 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | |||||| ||| || || ||| ||| | ||||||||||| |||| Sbjct 43113 GCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCA 43172 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 || || || || || | |||||| || | | |||| | | || ||| |||| Sbjct 43173 GCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCC 43232 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 |||| ||||||| || | ||||||||||||||| ||| | || | ||||| Sbjct 43233 ACAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCG 43292 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC-CTCGAGC 153326 |||||| |||| ||||||||||| | | ||||| ||||| | | | ||| || Sbjct 43293 AGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCA-CGATCGCTCCAGT 43351 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC-GCTTCTTCGCTCTC 153385 ||| | | ||| ||||| || ||| || || || || | || || | ||| Sbjct 43352 GCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGT-CGCCGAGCCTCGGCCGACTC 43410 Query 153386 GTACGGCATGCGC-AGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 ||| ||| | | | | || || || || || || ||||| | ||||| ||||| | Sbjct 43411 AAACG-CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCG 43469 Query 153445 GTCGATGCTTCTCGTTG--CT---GCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATC 153499 | || || | |||| || ||||||| |||| | ||||||| || || Sbjct 43470 GACGGTGACGCATGTTGGACTTGCGCGCCTC---CTCG--ACCGGATAGTAGTTAATGTC 43524 Query 153500 GATAATTTTGTTGAGGTTGC-GCACCACCACTTTAGTTATCGCCTTA-AGTTTCTCGAAA 153557 ||| || ||||| ||||| ||| ||| | | ||| | || || || Sbjct 43525 GATGATCTTGTTCAGGTTCTTGCAGATGGCCTT--GGCAACGCTGTGCAGACGCTTAAAG 43582 Query 153558 TCATAGGTCATTTCGTCGACGCGT--ACGCATCGATTCACGGCAATAGACGCCAGATTAC 153615 || || ||| || ||| | || | | | || || || || || || || | Sbjct 43583 TCGTACGTC--TTGGTCACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGC 43640 Query 153616 AGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATT 153675 | || ||| ||| |||| ||||||||| | |||||||| || | |||| ||| | Sbjct 43641 ACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACT 43700 Query 153676 TTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGT 153735 | || ||| | || | ||| ||||| ||||| ||| ||||| ||| | || ||| Sbjct 43701 TGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGA 43760 Query 153736 ACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGC-AGGTCCTGCGCTCGC 153794 | || ||| |||||| || | |||| ||| | || || | ||||||| Sbjct 43761 AAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG-CGTACCAGAGCTTCTGCGCTTTG 43819 Query 153795 ACCCGCTGCCGAT--AGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGT 153852 || | ||| | |||| |||||| |||||| |||||||| || ||||||||||||| Sbjct 43820 AC--GGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGT 43877 Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912 | |||||||||||||| || || || |||| | || ||||| |||||||| ||| Sbjct 43878 CACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGT 43937 Query 153913 -CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGC 153971 | || | ||| | |||||| ||||| ||||||||||| || || | ||| || ||| Sbjct 43938 TCTGC-TCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGC 43996 Query 153972 GCCTTGCAA-TCCTCCGCGCCCATGTT---GCGTTTCAGATTGAGCACGCTATAGATGTC 154027 || ||| |||||| || ||| ||| ||| | ||| | | ||| ||| Sbjct 43997 GCAC-GCACCTCCTCCTTTCCGTGGTTCTTGCG---CAGGTCGAGGAACTCAAAGACGTC 44052 Query 154028 GGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATC 154084 | |||||| ||||||||||| | || | |||||| |||||| || ||||| || Sbjct 44053 CGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTC 44112 Query 154085 GACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC-GGTGC 154143 ||||| |||| | | |||||||||||||| | |||||| | | |||| |||| | | Sbjct 44113 GACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCG-TTGCTGACAC 44171 Query 154144 CGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGC 154203 ||||||| || | |||| | | || | ||| | ||| | ||| |||| Sbjct 44172 CGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGATGC 44231 Query 154204 CGCC-GCCGTACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGAT 154261 | || ||||| ||| || || || | |||| || || ||||||||||||||| Sbjct 44232 CACCGGCCGT-CTTGGAGATCATGGCACAAGTC-TTGAGGGTATCGTAGATGCCGTCGAT 44289 Query 154262 GCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGC 154321 || || | | | | ||| ||||| | | ||||| |||| | | ||| Sbjct 44290 CGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGG-GTGCGGGGTACCGG 44348 Query 154322 CG-AAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTT 154380 || ||||| || || ||||| ||||| ||||| ||| | | |||||| | Sbjct 44349 CGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCT 44408 Query 154381 CGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCT 154440 |||||||| ||||| || | |||||| ||||||| ||||| |||||||||||||||| Sbjct 44409 CGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCT 44468 Query 154441 GCGGACGTTCGGCGAC 154456 | ||||| || ||||| Sbjct 44469 GGGGACGCTCTGCGAC 44484 >seq11 Length=69059 Score = 156 bits (172), Expect = 4e-33 Identities = 494/756 (65%), Gaps = 41/756 (5%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| | |||||| | |||||| ||| ||| | ||||||||||| || | ||| | Sbjct 34740 AACGACAATGAGCGCCACTTTATCTCGCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGT 34681 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAG--CGGAACGTTCCGGAACTCGAGGCGC 52203 ||||| ||| |||||| | ||| | ||| ||||| |||| || |||||| | Sbjct 34680 ATCGTCAACGAGAACCTCGTTGAGCGTTT-CAGTTCGGAA-GTTCAGGCCGCCGAGGCTC 34623 Query 52204 AATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGC 52263 | ||| || ||| || | | || ||| | | ||| |||||| ||| |||| Sbjct 34622 GTTGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCGGAGACCTACTCGCTGC 34563 Query 52264 TCATTGAGCAGCTGATAAAAGATGAGCACGAGC---GCGACACGCTGCTGAATGCGTTCG 52320 |||| || || || | | | ||||| |||| | || ||| | | || ||| Sbjct 34562 TCATCGA-CA-CTTACATCCG-TGAGCCTGAGCAGCGTGAATATCTGTTTGACGCCGTCG 34506 Query 52321 AGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACA 52380 || | | ||| ||| | ||||| | ||||| | |||||| ||||||| Sbjct 34505 AGACCATCCCGGTCGTCAAGCAGAAGGCCGACTGGGCTCTTCGATGGATC---AGCGACA 34449 Query 52381 CC---GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttttttt 52437 ||||| | |||||||| |||| || || ||| ||||||||| | ||||| | Sbjct 34448 AGCGTGCCACTTTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCT 34389 Query 52438 CCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGT 52497 | ||| || ||| | ||||| | | || | | || | |||||||| || |||| Sbjct 34388 CGGGCTCATTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGT 34329 Query 52498 TCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT----- 52552 || ||||||| | || ||||| ||||| || || |||||||||||||| ||||| Sbjct 34328 TCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCT 34269 Query 52553 ----CTACTACAAGACGCGCGTG-ACCGAAAAATTGGATTCGGACACGATCCTGAGCATG 52607 | || || || ||||| | ||| | |||||| | || | || Sbjct 34268 TCAGCCACCTCAGGAGGCGCGCGCACC-------------CAGACACGGTGCTCAAGATC 34222 Query 52608 TTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTG 52667 ||| ||||| |||| || || |||| ||| | | | | || |||| ||| Sbjct 34221 ATCACTGAGGCTGTGGAAATTGAGAAGGCGTTCCTGTGCGAATCAATCCCCGTCGCGCTC 34162 Query 52668 CTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTG 52727 | || |||||| || ||||||| | ||||| |||| ||| || ||||| || || Sbjct 34161 ATCGGTATGAACAGCAAGCTCATGTGCCAATACATTGAGTATGTCGCCGATCGCTTGCTG 34102 Query 52728 GTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCA-ATCCGTTTGAGTTTATGAACAA 52786 || |||||| | ||| | ||| | | | | || ||||||||| ||||||| ||| Sbjct 34101 GTATCGCTCGGAAACCCAGTGCACTACGGCTC-CACATGTCCGTTTGACTTTATGACCAA 34043 Query 52787 CATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAA 52822 ||||||| | || |||||||||||||| || ||||| Sbjct 34042 CATTTCGTTGGAAGGCAAGACCAACTTCTTTGAGAA 34007 >seq2728 Length=83621 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || ||||||||||| Sbjct 80275 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 80216 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || ||||| | |||| |||||||| ||||| || || Sbjct 80215 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 80156 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | ||||| | | |||||| | |||||||| Sbjct 80155 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT-CGATGGTGTCCGAAGACTCCAC 80097 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || ||||| || || || || ||||| |||||||| Sbjct 80096 CTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 80049 >seq2938 Length=227349 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||||||| | || || ||| ||||| || ||||| | Sbjct 129146 GACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCG 129205 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || ||||| ||||| ||| || || | Sbjct 129206 AAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 129265 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| || |||| || | || || || || || ||||| Sbjct 129266 TTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTTTTA 129325 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 129326 ACAAAAATCTGCAT 129339 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| || ||| || || ||||| || || |||| | Sbjct 128918 GATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCA 128977 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || ||||| ||||| ||| || || | Sbjct 128978 AAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACG 129037 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| || |||| || | || || || || || || || Sbjct 129038 TTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTG 129097 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 129098 ACAAAGATCTGCAT 129111 >seq2166 Length=204 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||| || || || ||||| | | ||| Sbjct 1 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGA 60 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | |||||||| ||||| || || ||||| || ||||| ||| || || | |||| Sbjct 61 TGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTG- 119 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | ||||| | ||| || || |||| || | ||| || || |||||||| || ||| Sbjct 120 TCGATTGTGTCTGACGATTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGACA 179 Query 138604 AAAATCTGCAT 138614 || |||||||| Sbjct 180 AAGATCTGCAT 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496244174763360