Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2938 141 2e-28 seq2728 120 7e-22 seq2337 114 3e-20 seq2166 104 6e-17 seq39 86.0 1e-11 seq2360 84.2 5e-11 >seq2938 Length=227349 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || |||||||| || |||||||| || || | ||||||||| | | || Sbjct 129119 CGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTT 129178 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| |||||||| || |||||||||||||||||||| || ||| ||| ||| Sbjct 129179 CGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCT 129238 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 129239 TCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGA 129298 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| |||||||| ||||| |||||||| || Sbjct 129299 GTAATGGTCTTGCCCGTGAGCGTTTTAACAAAAATCTG 129336 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| || ||||| || | ||||||||| | || ||| Sbjct 128891 CGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTG 128950 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| ||||| ||||| ||||||||||| || ||| ||| ||| Sbjct 128951 CGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCT 129010 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| |||| |||||| | | || || || | Sbjct 129011 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGA 129070 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || ||||| || || Sbjct 129071 GTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTG 129108 >seq2728 Length=83621 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| | | || | ||| || Sbjct 80260 AGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCC 80201 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| |||||||||||||| || ||| || || ||| Sbjct 80200 TCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCC 80141 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 80140 TGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTC 80081 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || ||||| || || Sbjct 80080 TTACCCGTGAGGGTCTTGACAAAGATCTG 80052 >seq2337 Length=130298 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| ||||| ||||| |||| ||||||||| | | || | ||||| Sbjct 31614 AGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 31555 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || ||||||||||| || ||| || || ||| Sbjct 31554 TCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 31495 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | || || || | || || ||| Sbjct 31494 TGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTC 31435 Query 199598 TTACCCGT 199605 ||||| || Sbjct 31434 TTACCTGT 31427 >seq2166 Length=204 Score = 104 bits (114), Expect = 6e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | || ||||| |||||||| || || |||| Sbjct 1 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGA 60 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 |||||||||||||||| || || || || ||||| ||||| ||| || | Sbjct 61 TGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 120 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||||| | ||| || || | ||||||||||| || || ||||| || |||| Sbjct 121 CGATTGTGTCTGACGATTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGACAA 180 Query 199620 AAATTTG 199626 | || || Sbjct 181 AGATCTG 187 >seq39 Length=280 Score = 86.0 bits (94), Expect = 1e-11 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 43091 CCTTTTAGTCTCTGAACCTTTT-CTTCTTTCGAAGAA-CTTGGCTGCGGATTGTCCAATC 43148 || ||||||||||||||||| |||||| |||||| |||||||||||||||||||||| Sbjct 193 CCATTTAGTCTCTGAACCTTCCACTTCTTGCGAAGAGGCTTGGCTGCGGATTGTCCAATC 252 Query 43149 CTCAACATTTTTACCATACCC 43169 | | |||||||||||||| Sbjct 253 TCTAGCGTTTTTACCATACCC 273 >seq2360 Length=818 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/132 (76%), Gaps = 14/132 (11%) Strand=Plus/Minus Query 43127 CTTGGCTGCGGATTGTCCAATCCTCAACATTTTTACCATACCC-ACGCCATTACGCT--T 43183 |||||||||||||||||||||| | | |||||||||||||| | ||||||| || | Sbjct 813 CTTGGCTGCGGATTGTCCAATCTCTAGCGTTTTTACCATACCCGAGGCCATTAACCTGGT 754 Query 43184 GGTGCA-----ACTCTTTCGA----GAAGCGGTAGTTGAGGCTCTAAGGAGTTTCCCGCA 43234 | |||| | ||| ||| | ||||||| | |||||||||||||||||||| Sbjct 753 GCTGCACCCCTAATCTCACGATGGGGCCGCGGTAGCTAGAGCTCTAAGGAGTTTCCCGCA 694 Query 43235 ATTTGAGGATGT 43246 |||| |||||| Sbjct 693 ATTT--GGATGT 684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178877221706846