Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2938 93.3 2e-13 seq428 86.0 2e-11 >seq2938 Length=227349 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || ||||| || || || || || Sbjct 129111 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 129052 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || || ||||| |||||||| |||||||||||||| Sbjct 129051 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 128992 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || |||||||| | ||| || |||| || || Sbjct 128991 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 128932 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || |||||||| || Sbjct 128931 ATTCAGAAGGAATCCACTCTTCACTTGGT 128903 Score = 91.5 bits (100), Expect = 6e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| |||||||| || || || || || |||||||| || || || || || Sbjct 129339 ATGCAGATTTTTGTTAAAACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 129280 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || || || || |||||||| |||||||||||||| Sbjct 129279 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 129220 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || ||||| || |||| | | || || || Sbjct 129219 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 129160 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | || || | || |||||| | || || |||| Sbjct 129159 ATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCGACT 129122 >seq428 Length=46974 Score = 86.0 bits (94), Expect = 2e-11 Identities = 270/417 (65%), Gaps = 11/417 (3%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | |||| | | || || ||||| | || ||||| |||| ||||| Sbjct 12355 GGCAAGCCCCAGATTCGCATTGAATACAAGGGTGAGAAGAAGACTTTCACTCCCGAAGAG 12296 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || ||||| |||||||| || ||| || || || || || | ||| | | Sbjct 12295 ATCTCATCCATGGTTCTCCTCAAGATGCGCGAGACTGCCGAGGCTTACCTCGGTGGTACC 12236 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | ||||| || | |||||||||||||| ||||| || | || || || || || Sbjct 12235 GTCAAGGATGCTGTCGTCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACC 12176 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || ||| | || | || || | || || || || || || || || Sbjct 12175 AAGGATGCTGGTATCATTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCT 12116 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-ACAGA---AGaaaaaaaTATTTT 451488 || || | || || || || | | ||||| || || || || ||| || | Sbjct 12115 GCCGCCATCGCTTACGGTCTCG-------ACAAGAAGACCGAGGGTGAGAAGAATGTTCT 12063 Query 451489 AGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGT 451548 | || ||| | |||||||| || ||| || | ||| | ||||| || || | Sbjct 12062 CATTTTCGATCTCGGTGGAGGTACCTTCGATGTATCGCTCCTTACCATTGAGGAGGGTAT 12003 Query 451549 ATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || ||||| ||| |||||| || ||||| || ||||| || |||| || Sbjct 12002 CTTCGAGGTCAAGGCCACCGCTGGTGACACCCATCTTGGTGGTGAGGACTTTGACAA 11946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975644027785304