Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2287 86.0 5e-11 >seq2287 Length=306898 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || ||||| || || | |||||||| || || || || | |||| || || Sbjct 305175 TTCTTGTCGAGACCGTAAGCGATGGCAGCAGCGGTAGGCTCGTTGACGATTCGCAGCACG 305234 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||||||||| || | || ||||| |||||||| |||| || | ||||| ||||| Sbjct 305235 TTAAGACCAGCGATGGTGCCAGCATCCTTAGTGGCCTGTCGCTGAGCGTCGTTGAAATAG 305294 Query 518285 GCAGGAACAGTAATAACGGC 518304 || ||||| || | |||||| Sbjct 305295 GCGGGAACGGTGACAACGGC 305314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780676606762228