Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq428 423 2e-113 seq2209 123 3e-23 seq2287 109 7e-19 seq662 91.5 2e-13 >seq428 Length=46974 Score = 423 bits (468), Expect = 2e-113 Identities = 788/1150 (69%), Gaps = 8/1150 (1%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||||| | |||||||| ||||| | || ||||| || || |||||||||||||| Sbjct 11502 TCACCCGAAAGAATGGCGGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTG 11561 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 |||| || || || || |||||| || | || | | || | || | || ||| Sbjct 11562 ATCGACTTGTTAAGCTCACGACCGTTGAAGAAGTCGGTGAGCAGCTTCTGCACCTTGGGG 11621 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || |||||||| | ||||| || | || || || ||||| ||| Sbjct 11622 ATACGAGTAGAACCACCGACAAGGACGATCTCGTGAACAGAGCCCTTGTCAATCTTGGAG 11681 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACG-GAACAAGTCCATACACAGTTC 7248 || || || || |||||||| || || | | || ||| | ||| ||| || || Sbjct 11682 TCGCGGAGAACCTTCTCGACAGGCTCAATGG-TGTGCGAGAAGAGGTCACCACAGAGCTC 11740 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| ||||| |||||||| || || || ||||| || | || || | | ||| || || Sbjct 11741 CTCGAAACGGGCACGGGTGATCGAGGTGTAGAAGTCGATACCCTCAAAGAGCGAGTCGAT 11800 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 || ||||| || || || | ||| || | || ||||| || |||||||| || || || Sbjct 11801 CTCGATGGTCGTCTGAGCAGCCGACGAGAGAGTACGCTTGGCACGCTCACAAGCAGTGCG 11860 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | ||||||||||||||| | ||| || | || ||||| | || || || ||||| Sbjct 11861 AAGACGACGAAGGGCACGAGCGTTGGTGGTCAAGTCCTTCTTGTTCTTGCGCTTGAACTC 11920 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 | ||||| | ||| | || || || |||||||| | || || || || Sbjct 11921 CTGGACAAAGTGGTTGACGAGACGGTTGTCAAAGTCCTCACCACCAAGATGGGTGTCACC 11980 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 ||||| || ||||| || |||||||| | |||||| | | | ||| ||||| || || Sbjct 11981 AGCGGTGGCCTTGACCTCGAAGATACCCTCCTCAATGGTAAGGAGCGATACATCGAAGGT 12040 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACC 7608 ||| ||||| || || |||||||| || ||| | || | || | ||||| |||||||| Sbjct 12041 ACCTCCACCGAGATCGAAAATGAGAACATTCTTCTCACCCTCGGTCTTCTTGTCGAGACC 12100 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668 ||| ||||| || || || || || || || || ||||| | ||| ||||| | ||| Sbjct 12101 GTAAGCGATGGCGGCAGCAGTGGGCTCGTTGATGATACGCATCACGTTAAGGCCCGAAAT 12160 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 | | ||||| || || || ||||| ||||| ||||| ||||| || || || || || Sbjct 12161 GATACCAGCATCCTTGGTGGCCTGTCGCTGCGAGTCGTTGAAGTAAGCGGGAACAGTGAC 12220 Query 7729 GACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAG 7788 ||| || ||| |||| | |||||| || | || || | || ||| ||| || Sbjct 12221 GACAGCATCCTTGACGGTACCACCGAGGTAAGCCTCGGCAGTCTCGCGCATCTTGAGGAG 12280 Query 7789 AACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTC 7848 |||||| ||||| |||||||| | | || ||| | ||||| || | |||| Sbjct 12281 AACCATGGATGAGATCTCTTCGGGAGTGAAAGTCTTCTTCTCACCCTTGTATTCAATGCG 12340 Query 7849 AATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908 |||| |||| | || | | |||| || |||||| | | ||| | ||||| || Sbjct 12341 AATC-TGGGGCTTGCCACCG-ACCGAGG-TAACCTCGAAAGGCCAGTGCTTCATGTCAGA 12397 Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968 ||||||| ||| ||||| | ||||| | |||||| || || || || ||||| Sbjct 12398 CTGGACCTCAGCGTCGTCGAACTTGCGGCCGATCAAACGCTTGGCGTCGAAGACGGTGTT 12457 Query 7969 TTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTC 8028 | ||||||||||| |||||||| || || || || || ||||| || || Sbjct 12458 GTGAGGGTTCATGGCGACCTGGTTCTTGGCGGCATCTCCAATGAGACGCTC---CGAGTC 12514 Query 8029 CGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 || || ||||| || || ||||| || || || || |||||||| ||||| | || || Sbjct 12515 GGTGAAGGCGACATATGAGGGGGTAGTGCGGTTACCCTGGTCGTTGGCAATGACCTCGAC 12574 Query 8089 GCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| |||||||||||| |||| || || || || || || | ||| |||||||| || Sbjct 12575 ACGGTCATTTTGCCAGACGGCGACACAGGAGTAGGTAGTACCAAGATCGATACCGATGGC 12634 Query 8149 TTGAGTCATT 8158 | |||||| Sbjct 12635 CTTGGTCATT 12644 >seq2209 Length=161921 Score = 123 bits (136), Expect = 3e-23 Identities = 272/405 (67%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| || || |||||||| ||| | | ||| || || || | | | | ||| ||| Sbjct 155856 TCCTCGAATCGCGCACGGGTGATGTTGGCCTGGAAGTCGACACCCTGGAAGAGCGAGTCA 155797 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | || | ||| || || | ||| || || || ||||| || |||||||| || | Sbjct 155796 ACCTCGACGGTGGTCTGGGTGACCGACGACAAGGTGCGCTTAGCACGCTCACAGGCTGAA 155737 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | ||| |||| ||||| | || ||| || || || ||| | || || | ||| Sbjct 155736 CGGAGACGGCGAACAGCACGGGCGTCACCCGAGATGTCGAGCTTGTTCTTGCGCTCGAAC 155677 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || | |||||| ||| || |||||| || |||||||| | ||| || || Sbjct 155676 TCCTTCTTGAAGTGGTCAAGAAGGGCGTTATCGAAGTCCTCACCACCAAGGTGGGTGTCA 155617 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| || ||||| | || | ||| || ||||| | | ||||||||| || Sbjct 155616 CCAGCGGTGGCCTTGACGGCGAAAACACCACCGGTGATGTTGAGGAGCGAAACATCGAAA 155557 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATC-GTCGTCTTTGTTCTTATCGAG 7605 || || ||||| || || | ||||| |||||| | || |||| | || ||||| Sbjct 155556 GTTCCTCCACCGAGATCGTAGATGAGGACGTTCTTCTCAGTCGACGAC-TTGGAGTCGAG 155498 Query 7606 ACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG 7650 |||||| ||||| || || || || || || || || ||||| || Sbjct 155497 ACCGTAGGCGATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAG 155453 Score = 118 bits (130), Expect = 1e-21 Identities = 301/455 (66%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || | || ||||| ||||| ||||| || ||||| || | ||| || Sbjct 154989 GCATCCTTGGTGGCGAGACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATGACGGCC 154930 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | | |||| | ||| || | | | || ||||| || ||||| ||||| || ||||| Sbjct 154929 TTCTTGACCTCCTTGCCAATCTTGGCCTCGGCGATCTCCTTCATCTTGGTGAGGACCATG 154870 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 || |||||||| | | | ||||| || || || ||| | | || || || | | Sbjct 154869 GAGGAAATCTCCTGGGGGGAGAACTGCTTGGTCTCGCCGAGGTAGTTGACCTCGATGAAG 154810 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 || | ||| | | || || | | | ||| | | ||| || | | ||| Sbjct 154809 GGGG-AGCCGT--CCTTGTCAATGACGGTGAAGGGCCAGTGCTGCATGTCCTTCTTGACG 154753 Query 7916 TGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGG 7975 | |||| | | ||||| |||||||| || || || || || | |||||| Sbjct 154752 TCAGGGTCATCGTATCGGCGACCGATGAGACGCTTGGCGTCGAAGACGGTCTGCTTGGGG 154693 Query 7976 TTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAAC 8035 |||||||| | |||||||| || || || || || |||||||| | || || || Sbjct 154692 TTCATGGCAGCCTGGTTCTTGGCGGCATCACCAATGAGACGTTC---GCTCTCGGTGAAA 154636 Query 8036 GCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCG 8095 ||||||||||| ||||| || || || || |||||||| ||||| ||||| || || || Sbjct 154635 GCGACGTACGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCAATGATTTCGACACGCTCA 154576 Query 8096 TTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 || ||| ||||| || || || || || || Sbjct 154575 TTGACCCACCAACCGACACAAGAGTAGGTGGTACC 154541 >seq2287 Length=306898 Score = 109 bits (120), Expect = 7e-19 Identities = 444/694 (64%), Gaps = 22/694 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || || || || || || |||| || Sbjct 305040 TCAAAGTCCTCACCACCAAGGTGAGTGTCGCCGGCAGTGGCAAGAACCTCGAAGACGCCC 305099 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | ||| || || || |||||||| || || || ||| | | Sbjct 305100 GAGTCAATCGAGAGGAGCGACACGTCGAAAGTACCACCGCCAAGATCGTAAACAATGATC 305159 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || || |||| || ||| ||||||||||| ||||| || || || || || || Sbjct 305160 TGCGATTCACCGTCCTT---CTTGTCGAGACCGTAAGCGATGGCAGCAGCGGTAGGCTCG 305216 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | || || || ||| || ||||| || || | ||||| || || || ||||| Sbjct 305217 TTGACGATTCGCAGCACGTTAAGACCAGCGATGGTGCCAGCATCCTTAGTGGCCTGTCGC 305276 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| || ||||| || || || || || |||| ||||| || | ||||| Sbjct 305277 TGAGCGTCGTTGAAATAGGCGGGAACGGTGACAACGGCGTGGGTGACCTTGTGGCCGAGG 305336 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || | |||||||| || |||||||| | || | ||| || | | Sbjct 305337 TAAGCCTCAGCAGTCTCTTTCATCTTCTGGAGAACCATGGCCGAGACCTCCTCGGGAGTG 305396 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCG--CAGCACCGG 7874 || ||| |||| ||||| | | || | || || || ||| | | | Sbjct 305397 AAGACCTTCTTTTCGCCGTTGACAGTGACCTGGATAGCAGGCTT-GCCGTTCTTCTC--- 305452 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGA--CCTG-TTGGTCCGAAAACT 7931 || | ||| | | | || ||| | || || ||| || | || ||| Sbjct 305453 -GACGAGCTTGAAGGGGAGGTGCTTGGCATCCTTTTTGAGGTCTGATTCGCCC---CACT 305508 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | ||||| || ||||| || ||||| | ||||||| ||||||| || | |||| Sbjct 305509 TGCGACCGATGAGGCGCTTGGCGTCAAAGATGGTGTTTTCGGGGTTCTGAGCGGCCTGGT 305568 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 |||| || ||||| |||| ||||| ||| | || || ||||| ||||| || | Sbjct 305569 TCTTGGCAGCGTCTCCGACGAGACGCTCAGGA------GTGAAGGCGACATACGAAGGAG 305622 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | | || || || ||||| || | |||||||| || || |||| | | || | Sbjct 305623 TGATACGGTTACCCTGGTCATTGGTGATAATTTCGACACGACCGTTGACCTGTGCACCAA 305682 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||||| || || ||||| | ||| ||||| || Sbjct 305683 CACACGAGTAGGTAGTTCCAAGATCGATACCAAT 305716 >seq662 Length=202279 Score = 91.5 bits (100), Expect = 2e-13 Identities = 206/306 (67%), Gaps = 14/306 (5%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC- 7515 || || || |||||||| | ||| || || || ||||| ||||| ||||||| || Sbjct 57917 TCAAAGTCCTCACCACCAAGGTGGGTGTCACCGTTGGTCGACTTGACCTCAAAGACGCCC 57858 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATG---AG 7572 | || || | | | | ||| | ||| || ||||| || |||| ||| || | | | Sbjct 57857 TTCTGCA-TCTCGAGAATCGAGATATCGAAGGTACCTCCTCCCAAGTCGAAGACGGCAAT 57799 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 ||| | | |||||| || |||||||||| || | || || || || || Sbjct 57798 CACG---GAAGAGTCGTCACGGT------CGAGACCGTAGGCAAGGGCGGCGGCGGTGGG 57748 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || | ||| ||| || || |||||||| | | ||||| || || || || Sbjct 57747 CTCGTTGATGACACGGAGAACGTCAAGACCAGCAATGGCACCGGCATCCTTGGTAGCCTG 57688 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || ||||| ||||| |||||||| || || || | ||| |||| | |||| |||| || Sbjct 57687 GCGCTGCGAGTCGTTGAAGTAGGCAGGAACAGTGATGACGGCGTGCTTGACCGTCTTGCC 57628 Query 7753 GAGATA 7758 ||| || Sbjct 57627 GAGGTA 57622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635109474747920