Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2497 289 4e-73 seq11 123 3e-23 >seq2497 Length=103896 Score = 289 bits (320), Expect = 4e-73 Identities = 915/1395 (66%), Gaps = 35/1395 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| |||| ||||| || | || || || | Sbjct 44472 CCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGAGCGCC 44413 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | ||| || | |||||| | || || ||||| Sbjct 44412 ATCGAGACGTACAACCTTATGTCGCAAAAGTACTTT-ACCCACGCCTCGCCTACGCTCTT 44354 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || || || | || || |||||| || | | ||||| || Sbjct 44353 CAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGA 44294 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | ||||| |||| || |||| |||||| ||||| ||| ||| || Sbjct 44293 CTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGG 44234 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 ||| ||||| | |||||||| || | | || | | |||||| || || || Sbjct 44233 TGGCATCGGCCTCAACATCCATTGCATCCGTGGCACC--GGCTCGTACATTGCCGGCACC 44176 Query 111909 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 || ||| |||| | || ||| | || ||||| ||||| || ||| ||| ||||||| Sbjct 44175 AACGGTG--TCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCT 44118 Query 111967 ATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 | || |||| | ||| ||||| | || | | || | || |||| |||| Sbjct 44117 ACGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCTATTTACATTGAACCAT 44061 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||| |||| || | |||||||| || |||| ||||| || | ||||||| || Sbjct 44060 GGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGC 44001 Query 112081 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 | ||| || || ||||||| || |||||| | || ||||||||||||||||| || ||| Sbjct 44000 G-TGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAG 43942 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| ||| | ||||| ||| | || || || || || ||||| |||| | Sbjct 43941 CAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCCGACTGCTAC 43882 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-AC 112258 ||||| |||||||| ||||||| ||||||| || |||| ||| ||| || Sbjct 43881 GGTGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCGA-AGCGCAC 43823 Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || ||| || || | | ||| | || || ||| |||| || |||||||| || | | Sbjct 43822 CGTCAAAGC-GCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACC 43764 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | || || ||||| |||||| |||| ||||| || || ||||| | || || Sbjct 43763 CTTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGA 43704 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| | |||||| | ||||| || ||| | || | | | || ||| ||| | Sbjct 43703 TCAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAG 43644 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 |||| |||||||| || ||||| || |||| || | || |||| ||| ||||| | | Sbjct 43643 TGTGCAACCTCGCCTCGATCGCACTGCCCACGTTCATTGACCCAGTGACCAAGACGTACG 43584 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | | || ||| ||| | || | || || ||||| |||| | || | Sbjct 43583 ACTTTAAGCGTCTGCACAGCGTTGCCAAGGCCATCTGCAAGAACCTGAACAAGATCATCG 43524 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | | || | || || || ||| || || || || || ||| | |||||||| || | Sbjct 43523 ACATTAACTACTATCCGGTCGAGGAGGCGCGCAAGTCCAACATGCGTCACCGTCCGATCG 43464 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTC 112675 | ||||||| || || || ||||||| ||||| || | | | | || ||||| || Sbjct 43463 GGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATGATCATGG--GGTATGCGTTTGAGTC 43406 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 | ||| || | | | || | || || |||||||| || || |||||||| || || Sbjct 43405 GGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGAGACCATCTACCACGCCGCACTGGA 43346 Query 112736 GGCGA--GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 |||| || | ||| |||| ||| | || || || || | | || || || Sbjct 43345 -GCGATCGTGC-GAGCTGGCTGAGCAGCACGGCAGCTACGAGACGTACGCCGGCTCGCCC 43288 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGA 112852 ||||| || || | | | || | || ||||||| ||| | | | | | | || Sbjct 43287 GCTTCGCAGGGTGAGTTGCAGTACGACATGTGGG-GGGTCACGCCGTCGGACCTGTGGGA 43229 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 ||||| | ||||||| ||| || | || ||||| ||| || || |||| Sbjct 43228 CTGGGCGGAGCTCAAGGCCAAGATCGCCAAGCACGGGCTTCGCAACTCGCTGCTGCTGGC 43169 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 ||| ||||| || || || || || ||| |||| ||| || ||||| || || || Sbjct 43168 ACCGATGCCGACCGCTTCGACGAGTCAGATCCTGGGCTTTAACGAGTGCTTCGAGCCTTA 43109 Query 112973 CACGACGAACATCTA 112987 ||| | |||||||| Sbjct 43108 TACGTCCAACATCTA 43094 >seq11 Length=69059 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || ||||| || |||| ||||| || ||||| ||||| ||||| || || ||| Sbjct 34437 TTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTC 34378 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | | || | |||||||||||||| ||||||||||| |||||| |||||||||||| Sbjct 34377 GCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAG 34318 Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || ||||| ||||||||||| || ||| || ||||| Sbjct 34317 CTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGC 34280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620719603235360