Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2938 179 8e-40 seq2337 140 7e-28 seq2728 125 2e-23 seq2166 100 6e-16 >seq2938 Length=227349 Score = 179 bits (198), Expect = 8e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| ||| ||||||||||| || |||||||| ||||| ||||| |||| || |||| Sbjct 129121 GAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCG 129180 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||||||||||||||| |||||||| || || || || || |||||||||||||| Sbjct 129181 GCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTC 129240 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || ||||||||| || ||||||||||| || ||||| || || Sbjct 129241 CTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGT 129300 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | ||||| || || | ||||| Sbjct 129301 AATGGTCTTGCCCGTGAGCGTTTTAACAAAAATCTGCAT 129339 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || || ||||| ||||| || | ||||| | |||||||||||||| Sbjct 128908 GTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTG 128967 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || |||||||| || || || || |||||||||||||| |||||||| || || Sbjct 128968 CTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTT 129027 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||||||| || ||||| || || | ||||| ||||| Sbjct 129028 GGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGT 129087 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 129088 GAGCGTCTTGACAAAGATCTGCAT 129111 >seq2337 Length=130298 Score = 140 bits (154), Expect = 7e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || || || || || || ||||| || | || || | ||||| ||| Sbjct 31611 ACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCG 31552 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || || || ||||| || ||||| || || ||||| ||| Sbjct 31551 AGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGA 31492 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || ||||||||||| ||||| |||||||||| ||||| Sbjct 31491 ATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTCTTA 31432 Query 195112 CCTGT 195116 ||||| Sbjct 31431 CCTGT 31427 >seq2728 Length=83621 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| || | ||| || | || || |||||||| Sbjct 80252 GTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCCTCGAGCTG 80193 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || || || ||||| || |||||||| || ||||| || || || Sbjct 80192 CTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTT 80133 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||||||| ||||| || || || | ||||| || || Sbjct 80132 GGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTCTTACCCGT 80073 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 80072 GAGGGTCTTGACAAAGATCTGCAT 80049 >seq2166 Length=204 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | || ||||| ||||||||||| || ||||| Sbjct 3 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATG 62 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || || || || || ||||| || || || |||||| || || Sbjct 63 AGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 122 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 || ||||| || ||| ||||| || || | |||||| || |||| ||| || || || Sbjct 123 ATTGTGTCTGACGATTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAG 182 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 183 ATCTGCAT 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109439835645446