Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2938 114 8e-21 seq2728 109 4e-19 >seq2938 Length=227349 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| ||| ||||||||||| |||||||| || | || |||| || Sbjct 128903 ACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCG 128962 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || ||||| || | || | || |||||||| Sbjct 128963 AGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGG 129022 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| | | ||||| | ||| | ||| || |||| || ||||| Sbjct 129023 ATCTTGGCCTTGAC----GTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGT 129078 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||| ||||| ||||||||||||||| Sbjct 129079 CTTGCCTGTGAGCGTCTTGACAAAGATCTGCATA 129112 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| ||||| || || |||| | || || ||||| || || || || Sbjct 129149 TCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAG 129208 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| ||||| |||||| Sbjct 129209 ATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 129268 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| || ||||| || |||||||| || || ||| Sbjct 129269 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTTTTAACA 129328 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 129329 AAAATCTGCAT 129339 >seq2728 Length=83621 Score = 109 bits (120), Expect = 4e-19 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||||||||| | ||| | || || Sbjct 80257 ACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCCTCG 80198 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| |||| | ||||||||||| Sbjct 80197 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGG 80138 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| | ||| | ||| || |||| || ||||| Sbjct 80137 ATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGT 80082 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || |||||||| ||||| |||||||||||||| || Sbjct 80081 CTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTT 80046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324621975885264