Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2497 331 2e-85 seq11 226 5e-54 >seq2497 Length=103896 Score = 331 bits (366), Expect = 2e-85 Identities = 1243/1916 (65%), Gaps = 100/1916 (5%) Strand=Plus/Plus Query 212582 CTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCAT 212641 |||||| || ||||||||| | || ||||| || ||||| |||||||| | |||||| Sbjct 42742 CTTGGTTCGCAGATAGTACGTACCCGTCTTGAGTCCCTTTTTCCAGCCGTAAAAGTGCAT 42801 Query 212642 TGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGT--AGGTTC 212699 | ||||| | | || | | ||| ||| | | || | ||| Sbjct 42802 CGAGGTGAGCTG-TCCA----------------AACGTCGGTGCCGAAAGGTGAATGTTG 42844 Query 212700 AGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTC 212759 || ||||| |||| || || | | | ||| || |||||||| ||||| | || Sbjct 42845 AGCGACTGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATGTCGATGATCGCCTTC 42904 Query 212760 TGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATG 212819 ||| || |||||| || |||||| | | | |||| | || || | ||| || | | Sbjct 42905 TGGCTGATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCAGGAATGCCTGGCACG 42964 Query 212820 TTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGG 212876 ||||| | || || | ||| ||| | | | | | |||| |||||| ||| Sbjct 42965 TTCTGGATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGTC---GTTCCACAGG 43021 Query 212877 CCCCTGGTCTCCAGGCACTTG-ACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAG 212935 ||| || || | || | | | || ||||| || | |||||| ||||| | ||| Sbjct 43022 CCC-TGCTCCACCAGCTCGCGCAACAACCACGGGTTCACCACCTGGAACTCACCCGCGAG 43080 Query 212936 CACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAAT 212995 ||| | || ||| | ||| || || || ||||||| || |||||| ||||| || Sbjct 43081 CACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGAT 43140 Query 212996 CTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTC 213055 ||| || || || ||||| || |||| ||| || ||| | | ||||||| Sbjct 43141 CTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTT 43200 Query 213056 GCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCAC 213115 | |||| | | ||||| ||||||||||| ||||||| | | || Sbjct 43201 GGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCA---------CAGGTCCGACGGCGTGAC 43251 Query 213116 GTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTG-GTAAGAGGAGT 213174 ||||||||| ||||||| || | || | |||| || | ||| | || Sbjct 43252 CCCCCACATGTCGTACTGCAACTCACCCT-GCGAAGCGGGCGAGCCGGCGTACGTCTCGT 43310 Query 213175 AGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTT 213234 || ||| |||| || ||||||||||| || || ||| || |||| ||||||||| | Sbjct 43311 AGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGCTCCAGTGCGGCGTGGTAGATGGTCT 43370 Query 213235 CAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCAT-CATCATGCGT 213293 |||| |||| | ||| || | ||||| | ||| | || |||| | |||| Sbjct 43371 CAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGAC-TCAAACGCATACCCCATGATC 43429 Query 213294 TGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGAC 213353 |||| |||| || || ||||| || ||||| ||||| || | ||| | || ||| ||| Sbjct 43430 ATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCATGTTGGAC 43489 Query 213354 TTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTT---GCG 213409 ||| | || |||||| | || || |||| ||||||||||||||| ||||| || Sbjct 43490 TTGCGCGC-CTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCA 43548 Query 213410 GGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTA-GCCCCCGTC-C 213467 | ||||| |||| || | ||| || | || || |||| | | ||| | Sbjct 43549 GATGGCC---TTGGCAACGCTGTGCAG--ACGC----TTAAAGTCGTACGTCTTGGTCAC 43599 Query 213468 TGCA-CAA---ACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAG 213522 || ||| || ||||| ||||| ||| |||||||| || |||||||| | | | Sbjct 43600 TGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGG 43659 Query 213523 AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCT 213582 || | ||||||| ||||||||||| |||| |||| ||| ||| ||||| ||||||| Sbjct 43660 AG-CGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCT 43718 Query 213583 GGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTA 213642 ||||| ||| |||||| | |||||||| || ||| | ||| || ||||| Sbjct 43719 TCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGG 43778 Query 213643 GCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC 213702 ||| ||| | || || | |||||| | | || ||||| ||| | ||| Sbjct 43779 TCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCG-AGCGA 43837 Query 213703 CGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCA 213762 | || |||||||| | |||||||| | || |||| || || | ||| Sbjct 43838 CCCTCG--GCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCA 43895 Query 213763 GTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGC 213821 | || || || ||| |||||||| |||||| |||| | ||| ||| |||| | Sbjct 43896 GACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTC-GACCCTCTTC 43954 Query 213822 ATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACT 213881 ||||| || || || ||||| || || ||| || || | | | | ||| ||| | Sbjct 43955 ATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTT 44014 Query 213882 CCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAG 213941 || ||| |||||||| || || || ||||||| ||||| |||||| || || ||||| Sbjct 44015 CCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAA 44074 Query 213942 ATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTG 213998 || |||||||| || || | |||| || |||||||| || | || ||||| Sbjct 44075 ATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTG 44134 Query 213999 AAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTC--CGTTGGTTCCCGCTATATACG 214056 |||| ||| || | ||| || | |||||| ||| | ||||||| || || || |||| Sbjct 44135 AAGACGCGGAGCATGGGCACAATGCCGTTG--CTGACACCGTTGGTGCCGGCAATGTACG 44192 Query 214057 AGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCCTATGCCACCGGCGTACTTGGAG 214112 |||||| | | | || ||| ||||| ||| || ||||||||||| ||||||| Sbjct 44193 AGCCGGTGCCAC---GGATGCA-ATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAG 44248 Query 214113 ATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTC 214172 |||||||| || | | | || || ||||||| | || |||||| | | | | Sbjct 44249 ATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTA 44308 Query 214173 AGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTG 214232 | | |||||| ||||||||| || | | || | |||||| ||||| || | Sbjct 44309 ACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAG 44368 Query 214233 GCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCG 214292 || ||| | | |||| | || | || |||| ||||| | | | |||||| Sbjct 44369 GCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCC 44428 Query 214293 TGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCT 214352 || |||||| | |||| | ||| |||||||||||||| | ||| || | ||| Sbjct 44429 TGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTC--TGCGACCT 44486 Query 214353 TTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCC---AAAGTAG 214403 | ||| || ||||| ||||| ||||| || |||||||| || ||||| | Sbjct 44487 T----GCCGTTGATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTG 44542 Query 214404 GAGTAGGTATGATCGTTCCCGTGTATGAGGGCAGCGTCCAGCTCTTCCGCGTGCTC 214459 ||| || | |||| ||| |||| ||| | ||| |||| ||| |||||| Sbjct 44543 TAGT-GGAAGTCACGTT--CGTAGATGATGGCCGAGTCGAGCTGGTCCTTGTGCTC 44595 >seq11 Length=69059 Score = 226 bits (250), Expect = 5e-54 Identities = 553/828 (67%), Gaps = 20/828 (2%) Strand=Plus/Plus Query 47858 TTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGT-- 47915 |||||||||||||| ||||| || |||||||| ||||| ||| ||| || || Sbjct 34007 TTCTCAAAGAAGTTGGTCTTGCCTTCCAACGAAATGTTGGTCATAAAGTCAAACGGACAT 34066 Query 47916 -TGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTAC 47974 ||| || | ||| | | || | | | |||||| | |||| ||||| ||| Sbjct 34067 GTGGAGCCGTAGTGCACTGGGTTT---CCGAGCGATACCAGCAAGCGATCGGCGACATAC 34123 Query 47975 TCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTT 48034 || ||||||| ||||||| || ||||||| || ||||| | ||||| | | | Sbjct 34124 TCAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCGACGGGGATTGATTCG 34183 Query 48035 GTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCT 48094 || ||| ||||||| || | ||| || || | |||| || || | || Sbjct 34184 CACAGGAACGCCTTCTCAATTTCCACAGCCTCAGTGATGATCTTGAGCAC-CGTGTCTGG 34242 Query 48095 GAGGGTTTGT-TGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCC 48153 | | | | | | ||||| || |||| | ||||||||||||| |||| | || Sbjct 34243 GTGCGCGCGCCTCCTGAGGTGGCTGA---AGAGAAGGCAGGCAAAGTCCGTGTGAAGACC 34299 Query 48154 TTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTT 48213 ||||| || ||||||| |||||||||| |||||| ||||||| || | || || Sbjct 34300 CTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTTCTT 34359 Query 48214 GAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||| || | ||||| ||||| ||||| ||||||||||| || || || ||||| Sbjct 34360 GAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAACGC 34419 Query 48274 GGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGC 48333 | || | ||| |||||| || |||||| |||||| ||| |||||||| || Sbjct 34420 GACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGCCCAGTCGGC 34479 Query 48334 CTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACT-CACCTG 48392 ||||| ||||| | || || ||||| | ||| || || | | | || | | | Sbjct 34480 CTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTGCTCAGG 34539 Query 48393 CGTCCGCAACATAG-GTAG-TGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTAT 48450 | || | || || | |||||||| | ||| |||| ||||| | ||||| || Sbjct 34540 CTCACGGATGTAAGTGTCGATGAGCAGC---GAGTAGGTCTCCGAGTGGATGTTCTCCAT 34596 Query 48451 AGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCT 48510 ||||||||| ||||||||| | ||||| |||| ||||| | ||| | Sbjct 34597 CATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACTGAAACG 34656 Query 48511 CTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTT 48570 ||| | || ||||| ||||| || ||||| || ||||| ||||| ||||| ||||| Sbjct 34657 CTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCACATGCGA 34716 Query 48571 AAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAG 48627 | || |||||||| |||| | | || || |||| | || | ||| ||| || Sbjct 34717 GATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCTTGGAAAG 34776 Query 48628 GTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||| | || || | ||||||||||| || || || |||||||| Sbjct 34777 GTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 34824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931498589457920