Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2497 291 2e-73 seq11 248 2e-60 >seq2497 Length=103896 Score = 291 bits (322), Expect = 2e-73 Identities = 796/1203 (66%), Gaps = 31/1203 (3%) Strand=Plus/Plus Query 221370 CGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGT 221429 |||||| ||||||| |||| | | || ||| | |||| || || ||| || |||| Sbjct 43299 CGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGCTCCAGTGCGGCGT 43358 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 |||||||||||||||||||| | ||| |||| | ||||||| || | || ||| Sbjct 43359 GGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGAC-TCAAACGCA 43417 Query 221490 TACGC-AGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTG 221547 ||| | | ||| |||| | | || || || ||||| || ||||| ||||| || | ||| Sbjct 43418 TACCCCATGATCATGAACG-CATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTG 43476 Query 221548 TCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTT 221607 | | ||||||| | ||| || || ||||| |||| | |||||| | ||||| Sbjct 43477 ACGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTT 43536 Query 221608 GAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTC 221667 |||||| |||| | || | || | ||| || || || Sbjct 43537 CAGGTTCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTA------------AAGTC 43584 Query 221668 GCCGCCGTCGTGG--AGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 | |||| ||| | || || | || | | || || | ||| ||||| ||| Sbjct 43585 GTA--CGTCTTGGTCACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCAC 43642 Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 || ||||||||||| | | |||| |||||||| ||||| | |||| ||||||| Sbjct 43643 ACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTG 43702 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845 || || || |||| || || || |||||| ||||| ||||||||||| || || || Sbjct 43703 ATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAA 43762 Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCAC 221904 || ||| ||||| ||| | | | || || || |||||| | |||| || | || Sbjct 43763 GGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCT-TCTGCGCTTTGAC 43821 Query 221905 CGTCCTCTT-GACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTT 221963 || | ||| || | |||||||| || | | || ||||| ||||||| | Sbjct 43822 GGTGCGCTTCGAGCG-ACCCTCGGCCTCGTAGCGCTCG---TAGAGGCGCTCAAACTCGT 43877 Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGT 222023 ||||||| ||| |||| || || ||| | ||| ||||| || ||||| || Sbjct 43878 CACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGT 43937 Query 222024 TGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGG 222083 | | | |||||||| ||||||||| || || | ||| || || | ||||| || | | Sbjct 43938 TCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCG 43997 Query 222084 TCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGT 222143 ||| ||||||| |||| ||| || | ||| || | |||||||| | ||| | || Sbjct 43998 CACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGT 44057 Query 222144 GCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCA 222203 |||| || || | || | || | || ||||| ||||||||||||||||| || || Sbjct 44058 GCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGT 44117 Query 222204 TCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTG 222262 | | ||| | |||||||| ||| || | || || | |||||| ||||||| Sbjct 44118 AGCGC-GCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTG 44176 Query 222263 GTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGATACCACC 222321 ||||| |||||||| ||| | | | | | | ||| | | |||||| ||||| Sbjct 44177 GTGCCGGCAATGTACGAGCCGGTGCCACGGATG-CAATGGATGTTGAGGCCGATGCCACC 44235 Query 222322 GGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTC 222381 ||| || ||||||||||| || ||||||| || || |||||| || || ||||| Sbjct 44236 GGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTC 44295 Query 222382 CTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAA 222441 ||||| | | | | || || || ||||| | ||| | | | || || |||||| || Sbjct 44296 ATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAA 44355 Query 222442 CAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGAC 222501 ||||| || |||||| |||||||| ||||| || | ||||||||| | | | Sbjct 44356 GAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGC 44415 Query 222502 TCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCT 222561 || |||||| | ||||| || | ||| || |||| ||||| |||||| | Sbjct 44416 GCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACG 44475 Query 222562 CTC 222564 ||| Sbjct 44476 CTC 44478 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||||||||| ||||| || |||| |||||| | || ||| | ||| || || | || Sbjct 43054 GTTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGG 43113 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||| ||||||||||||| ||| ||||| ||||| ||||||| Sbjct 43114 CTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAG 43173 Query 221236 CAGCAGACTGTTGCGCAGTCCG 221257 |||||| |||||| || ||| Sbjct 43174 CAGCAGCGAGTTGCGAAGCCCG 43195 >seq11 Length=69059 Score = 248 bits (274), Expect = 2e-60 Identities = 569/851 (67%), Gaps = 36/851 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || ||||||||| || ||||| || || Sbjct 34833 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34774 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAA-GAC---GAGCAGCATTTTCTCAA 25592 |||||||| | ||| |||| || | | | || ||| |||| || ||| || Sbjct 34773 TCCAAGGACCTCCACGACTGGGACAA-CAAGCTGAACGACAATGAGCGCCACTTTATCTC 34715 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | | ||| | || ||||| || || || |||||||| || |||||||| || ||| | Sbjct 34714 GCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG 34655 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| |||||| ||| || ||||| || ||||||||||||||||| || Sbjct 34654 TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 34595 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACA-TTACAGACGTC- 25770 || || | ||||| ||| || | ||| || || || ||| ||||| ||| Sbjct 34594 GGAGAACATCCACTCGGAGACCTACTC---GCTGCTCAT--CG-ACACTTACATCCGTGA 34541 Query 25771 GCCG----AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 ||| || | || ||||||| ||| ||||| ||| || | ||||| ||| Sbjct 34540 GCCTGAGCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAA 34481 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| ||||| | ||||||| | | || | || || || | |||||| ||||| Sbjct 34480 GGCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGTGCCACTTTCGCCGAGCGTCTGGT 34421 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 || ||||| || || ||||||||||||||| || || || || | ||||||||||| Sbjct 34420 CGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCT 34361 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || || ||||||||| || || ||||||||||||||| | ||||| Sbjct 34360 CAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGA 34301 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 |||||| |||| || ||||||||||| |||| || ||||| ||| | | | Sbjct 34300 GGGTCTTCACACGGACTTTGCCTGCCTTCTCTTCA---GCCAC---CTCAGGAGGCGCGC 34247 Query 26067 TCA---AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCN 26123 || ||| || || || ||||||| ||||||||||| || ||||||| ||| | Sbjct 34246 GCACCCAGACACGGTGCTCAAGATCATCACTGAGGCTGTGGAAATTGAGAAGGCGTTCCT 34187 Query 26124 NNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACAT 26183 | || ||||||| || |||||| |||||||||| Sbjct 34186 GTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCAAGCTCATGTGCCAATACAT 34127 Query 26184 TGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC 26243 ||||||||| ||||| | ||||| ||| ||| | |||| | || |||| | Sbjct 34126 TGAGTATGTCGCCGATCGCTTGCTGGTATCGCTCGGAAAC-CCAG----TGCACTACGGC 34072 Query 26244 T-AAC----CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 | || ||||| ||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 34071 TCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTTCTTT 34012 Query 26299 GAAAAGAGGGT 26309 || || | ||| Sbjct 34011 GAGAAAAAGGT 34001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928810688174720