Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq428 114 8e-20 seq2938 96.9 2e-14 >seq428 Length=46974 Score = 114 bits (126), Expect = 8e-20 Identities = 361/553 (65%), Gaps = 10/553 (2%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || ||||| ||| ||||| || || |||||||||| Sbjct 12634 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 12575 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | |||||||| ||||| ||||| | || || || |||||||| | || || Sbjct 12574 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATATGTCGCCTTCACC 12515 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | ||| ||||||||||| || || | || | || || ||| || Sbjct 12514 GACTCGGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCACAAC 12455 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || || || || | ||||| || || || || || || | ||||| ||| Sbjct 12454 ACCGTCTTCGACGCCAAGCGTTTGATCGGCCGCAAGTTCGACGACGCTGAGGTCCAGTCT 12395 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAA--ACCATATATAGAAG 474626 || ||| || |||||||| |||| | || ||||| || ||| || | Sbjct 12394 GACATGAAGCACTGGCCTTTCGAGGTTACCTCGGTCGGTGGCAAGCCCCAGATTCGCATT 12335 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTTT 474684 |||||| | ||||| | | | | ||||| || ||| | || || || |||||| | Sbjct 12334 GAATACAAG--GGTGAGA--AGAAGACTTTCACTCCCGAAGAGATCTCATCCATGGTTCT 12279 Query 474685 AGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 ||| ||| | || | |||| | || || || || | ||||| || Sbjct 12278 CCTCAAGATGCGCGAGACTGCCGAG-GCTTACCTCGGTGGTACCGTCAAGGATGCTGTCG 12220 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | |||||||| || || || || || || || || || || || || ||||| || | | Sbjct 12219 TCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACCAAGGATGCTGGTATCA 12160 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || | || ||||| || | ||||| || || || || || || ||||| | ||||| | Sbjct 12159 TTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTTACG 12100 Query 474864 GTCTTGATAAGAA 474876 |||| || ||||| Sbjct 12099 GTCTCGACAAGAA 12087 >seq2938 Length=227349 Score = 96.9 bits (106), Expect = 2e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | ||||| || ||| || || || || || | ||||| Sbjct 128890 ACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGT 128949 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || ||||| || ||||| |||||||| || |||||||||||||| || Sbjct 128950 GCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCC 129009 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||||||| ||||| Sbjct 129010 TTCCTTGTCTTGGATCTT 129027 Score = 87.8 bits (96), Expect = 1e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 480564 ACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCA 480623 ||||| ||||| || ||||| || || || || | || |||| | ||||| Sbjct 129131 ACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCG 129190 Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 || ||||| ||||| || || ||||| || |||||||||||||| ||||||||||| || Sbjct 129191 AGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 129250 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| ||||| || || || || | | ||| || ||||| || || Sbjct 129251 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTG 129310 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || ||||| ||||| || Sbjct 129311 CCCGTGAGCGTTTTAACAAAAATCTG 129336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268053174924824